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    Calhy_2055 xylose isomerase [ Caldicellulosiruptor hydrothermalis 108 ]

    Gene ID: 9936615, updated on 11-May-2013
    Gene symbol
    Calhy_2055
    Gene description
    xylose isomerase
    Locus tag
    Calhy_2055
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caldicellulosiruptor hydrothermalis 108 (strain: 108)
    Lineage
    Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor
    Location :
    country: Russia: Kamchatka, isolation source: terrestrial neutral geothermal spring
    Sequence :
    NC_014652.1 (2110115..2111431, complement)

    NC_014652.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene DNA binding domain-containing protein, excisionase family Neighboring gene major facilitator superfamily protein Neighboring gene two component transcriptional regulator, arac family Neighboring gene signal transduction histidine kinase, lyts

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus. Blumer-Schuette SE, et al. J Bacteriol, 2011 Mar. PMID 21216991.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    xylose isomerase
    YP_003993134.1
    • TIGRFAM: xylose isomerase~KEGG: ate:Athe_0603 xylose isomerase~PFAM: Xylose isomerase domain protein TIM barrel

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014652.1

      Range
      2110115..2111431, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_003993134.1 xylose isomerase [Caldicellulosiruptor hydrothermalis 108]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E4QEE6
      Conserved Domains (2) summary
      PRK05474
      Location:3 – 437
      Blast Score: 2061
      PRK05474; xylose isomerase; Provisional
      TIGR02630
      Location:3 – 435
      Blast Score: 1981
      xylose_isom_A; xylose isomerase
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002219.1 ADQ07765.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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