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    pcaH putative protocatechuate 3,4-dioxygenase beta chain protein [ Ketogulonicigenium vulgare Y25 ]

    Gene ID: 9886534, updated on 18-May-2013
    Gene symbol
    pcaH
    Gene description
    putative protocatechuate 3,4-dioxygenase beta chain protein
    Locus tag
    EIO_3173
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ketogulonicigenium vulgare Y25 (strain: Y25)
    Lineage
    Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium
    Location :
    plasmid: pYP12
    Sequence :
    NC_014626.1 (39629..40357, complement)

    NC_014626.1Genomic Context describing neighboring genes Neighboring gene 3-carboxy-cis,cis-muconate cycloisomerase Neighboring gene hypothetical protein Neighboring gene protocatechuate 3,4-dioxygenase alpha chain Neighboring gene 4-carboxymuconolactone decarboxylase Neighboring gene pseudo Neighboring gene beta-ketoadipyl CoA thiolase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Complete genome sequence of the bacterium Ketogulonicigenium vulgare Y25. Xiong XH, et al. J Bacteriol, 2011 Jan. PMID 21037005.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    putative protocatechuate 3,4-dioxygenase beta chain protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014626.1

      Range
      39629..40357, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_003965281.1 putative protocatechuate 3,4-dioxygenase beta chain protein [Ketogulonicigenium vulgare Y25]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E3F5I6
      Conserved Domains (2) summary
      TIGR02422
      Location:17 – 237
      Blast Score: 944
      protocat_beta; protocatechuate 3,4-dioxygenase, beta subunit
      cl01383
      Location:12 – 232
      Blast Score: 866
      Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002226.1 ADO44230.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

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