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    lmo0105 highly similar to chitinase B [ Listeria monocytogenes EGD-e ]

    Gene ID: 986634, updated on 11-May-2013
    Gene symbol
    lmo0105
    Gene description
    highly similar to chitinase B
    Locus tag
    lmo0105
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Listeria monocytogenes EGD-e (strain: EGD-e)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria
    Sequence :
    NC_003210.1 (110013..112283)

    NC_003210.1Genomic Context describing neighboring genes Neighboring gene similar to NADH oxidase Neighboring gene lmo0104 Neighboring gene similar to transcription regulator Neighboring gene similar to ABC transporter, ATP-binding protein Neighboring gene similar to ABC transporter, ATP-binding protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Chitin hydrolysis by Listeria spp., including L. monocytogenes. Leisner JJ, et al. Appl Environ Microbiol, 2008 Jun. PMID 18424542.
    2. Intracellular gene expression profile of Listeria monocytogenes. Chatterjee SS, et al. Infect Immun, 2006 Feb. PMID 16428782.
    3. Comparative genomics of Listeria species. Glaser P, et al. Science, 2001 Oct 26. PMID 11679669.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. In Listeria monocytogenes EGD, chitin hydrolysis depends on genes encoding two chitinases, lmo0105 (chiB) and lmo1883 (chiA), but not on a gene encoding a putative chitin binding protein (lmo2467).
      Title: Chitin hydrolysis by Listeria spp., including L. monocytogenes.
    Submit: New GeneRIF Correction
    Preferred Names
    highly similar to chitinase B
    Names
    hypothetical protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003210.1

      Range
      110013..112283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_463638.1 hypothetical protein lmo0105 [Listeria monocytogenes EGD-e]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q8YAL3
      Conserved Domains (5) summary
      cd06548
      Location:40 – 436
      Blast Score: 879
      GH18_chitinase; The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an ...
      cd12215
      Location:718 – 752
      Blast Score: 154
      ChiC_BD; Chitin-binding domain of chitinase C
      COG3325
      Location:1 – 480
      Blast Score: 1190
      ChiA; Chitinase [Carbohydrate transport and metabolism]
      COG3979
      Location:616 – 756
      Blast Score: 143
      COG3979; Uncharacterized protein contain chitin-binding domain type 3 [General function prediction only]
      cd00063
      Location:618 – 672
      Blast Score: 83
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    Nucleotide Protein
    Heading Accession and Version
    genomic AL591973.1 CAC98320.1
    genomic AL591824.1 CAC98320.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Miscellaneous

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed (GeneRIF)
        GeneRIF -- Gene Reference Into Function Staff of the Index Section in the National Library of Medicine review the current literature. When they find articles focused on the structure and function of a gene, they write a brief summary of the impact of the paper and make the connection between the citation (PubMed) and Gene. An interface exists for interested users to submit such data as well. http://www.ncbi.nlm.nih.gov/projects/GeneRIF/GeneRIFhelp.html
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

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