Display Settings:

Format

Send to:

Choose Destination

    ZEB2 zinc finger E-box binding homeobox 2 [ Homo sapiens ]

    Gene ID: 9839, updated on 13-May-2012

    Summary

    Official Symbol
    ZEB2provided by HGNC
    Official Full Name
    zinc finger E-box binding homeobox 2provided by HGNC
    Primary source
    HGNC:14881
    Locus tag
    HRIHFB2411
    See related
    Ensembl:ENSG00000169554; HPRD:05780; MIM:605802; Vega:OTTHUMG00000131834
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SIP1; SIP-1; ZFHX1B; HSPC082; SMADIP1; FLJ42816; KIAA0569
    Summary
    The protein encoded by this gene is a member of the Zfh1 family of 2-handed zinc finger/homeodomain proteins. It is located in the nucleus and functions as a DNA-binding transcriptional repressor that interacts with activated SMADs. Mutations in this gene are associated with Hirschsprung disease/Mowat-Wilson syndrome. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Jan 2010]

    Genomic context

    Location :
    2q22.3
    Sequence :
    Chromosome: 2; NC_000002.11 (145141942..145277958, complement)
    See ZEB2 in Epigenomics, MapViewer

    Chromosome 2 - NC_000002.11Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 15 Neighboring gene glycosyltransferase-like domain containing 1 Neighboring gene putative uncharacterized protein encoded by NCRNA00269-like Neighboring gene uncharacterized LOC401014 Neighboring gene sarcoglycan, epsilon, pseudogene Neighboring gene uncharacterized LOC100505498

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Mowat-Wilson syndrome

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Mowat-Wilson syndrome (MWS) is characterized by distinctive facial features; structural anomalies including Hirschsprung disease, genitourinary anomalies (particularly hypospadias in males), congenital heart defects (abnormalities of the pulmonary arteries and/or valves), agenesis or hypogenesis of the corpus callosum, and eye defects (microphthalmia and Axenfeld anomaly); and functional differences including moderate to severe intellectual disability, severe speech impairment with relative preservation of receptive language, seizures, growth retardation with microcephaly, and chronic constipation in those without Hirschsprung disease.
    Diagnosis Testing
    Mutations and deletions in the gene ZEB2 (also known as ZFHX1B or SIP-1) cause MWS. Sequence analysis detects mutations in approximately 81% of individuals; FISH detects large deletions encompassing all or part of ZEB2 in approximately 15% of persons; chromosomal rearrangements that disrupt the ZEB2 gene cause MWS in approximately 2% of individuals; and an additional 2% have intermediate-sized deletions that can be detected by techniques such as quantitative PCR, MLPA or gene-specific array GH.
    Genetic Counseling
    Mowat-Wilson syndrome is typically the result of a de novo dominant mutation. When MWS results from a de novo mutation, the risk to the sibs of a proband is small. No individuals with MWS have been known to reproduce. Although the vast majority of MWS occurs as the result of a de novo mutation, molecular genetic testing can be used to evaluate a pregnancy at theoretically increased risk because of constitutional and/or germline mosaicism for a ZEB2 mutation in a clinically unaffected parent. Parents of an individual with MWS resulting from a structural unbalanced chromosome constitution (e.g., deletion, duplication) are at risk of having a balanced chromosome rearrangement. The risk to sibs of a proband with a structural unbalanced chromosome abnormality depends upon the chromosome findings in the parents. Prenatal diagnosis for pregnancies at increased risk because of parental balanced structural rearrangement is possible by chromosome analysis of fetal cells obtained by amniocentesis or chorionic villus sampling.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    O60315 Q7L5N1 COPS6    HPRD  PubMed  
    O60315 Q13363 CTBP1    HPRD  PubMed  
    O60315 P56545 CTBP2    HPRD  PubMed  
    O60315 Q15797 SMAD1    HPRD  PubMed  
    O60315 Q15796 SMAD2    HPRD  PubMed  
    O60315 P84022 SMAD3    HPRD  PubMed  
    O60315 Q99717 SMAD5    HPRD  PubMed  
    O60315 O15198 SMAD9    HPRD  PubMed  
    BioGRID:115175 BioGRID:107479 CEBPA    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115175 BioGRID:116176 COPS6    BioGRID  PubMed Two-hybrid 
    BioGRID:115175 BioGRID:109315 HDAC1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115175 BioGRID:109316 HDAC2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115175 BioGRID:114562 MTA1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115175 BioGRID:114652 MTA2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115175 BioGRID:111863 RBBP4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115175 BioGRID:111866 RBBP7    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115175 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • TGF Beta Signaling Pathway, organism-specific biosystem (from WikiPathways)
      TGF Beta Signaling Pathway, organism-specific biosystemThe Transforming growth factor beta (TGFβ) signaling pathway is involved in many cellular processes in both the adult organism and the developing embryo including cell growth, cell differentiat...
    • TGF-beta Receptor Signaling Pathway, organism-specific biosystem (from WikiPathways)
      TGF-beta Receptor Signaling Pathway, organism-specific biosystem"The TGF beta receptors TGFBR1 and TGFBR2 belong to a subfamily of membrane-bound serine/threonine kinases which are designated as Type I or II based on their structural and functional properties. Th...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    SMAD binding NAS
    Non-traceable Author Statement
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatase regulator activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell proliferation in forebrain IEA
    Inferred from Electronic Annotation
    more info
     
    central nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    embryonic morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    hippocampus development IEA
    Inferred from Electronic Annotation
    more info
     
    nervous system development NAS
    Non-traceable Author Statement
    more info
    PubMed 
    neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
     
    neural tube closure IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of JUN kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of Wnt receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    somitogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    intracellular IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger E-box-binding homeobox 2
    Names
    zinc finger E-box-binding homeobox 2
    zinc finger homeobox 1b
    SMAD interacting protein 1
    Smad-interacting protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016431.1 RefSeqGene

      Range
      5001..141017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001171653.1NP_001165124.1  zinc finger E-box-binding homeobox 2 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) is missing an in-frame coding exon compared to variant 1, resulting in a shorter isoform (2) lacking an internal protein segment compared to isoform 1.
      Source sequence(s)
      AB056507, AC010130, AI341193, AK294928, BP218652, DA305985
      Consensus CDS
      CCDS54403.1
      UniProtKB/TrEMBL
      B7Z2P2
      UniProtKB/TrEMBL
      F5H814
      UniProtKB/Swiss-Prot
      O60315
      Related
      ENSP00000443792, OTTHUMP00000204550, ENST00000539609, OTTHUMT00000332807
      Conserved Domains (3) summary
      cd00086
      Location:629672
      Blast Score: 91
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam13465
      Location:272295
      Blast Score: 105
      zf-H2C2_2; Zinc-finger double domain
      cl15478
      Location:259280
      Blast Score: 86
      zf-C2H2; Zinc finger, C2H2 type
    2. NM_014795.3NP_055610.1  zinc finger E-box-binding homeobox 2 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AB056507, AC010130, AI341193, BP218652, DA305985
      Consensus CDS
      CCDS2186.1
      UniProtKB/Swiss-Prot
      O60315
      Related
      ENSP00000302501, OTTHUMP00000162653, ENST00000303660, OTTHUMT00000254778
      Conserved Domains (3) summary
      cd00086
      Location:653696
      Blast Score: 91
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam13465
      Location:296319
      Blast Score: 105
      zf-H2C2_2; Zinc-finger double domain
      cl15478
      Location:283304
      Blast Score: 87
      zf-C2H2; Zinc finger, C2H2 type

    RNA

    1. NR_033258.1 RNA Sequence

      Description
      Transcript Variant: This variant (3) is missing many exons from the 3' end and contains an alternate 3' terminal exon compared to variant 1. It is represented as non-coding because it has transcript support but lacks a large portion of the coding region.
      Source sequence(s)
      BC025696, BC025730, BP218652, BU688017

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000002.11 Reference GRCh37.p5 Primary Assembly

      Range
      145141942..145277958, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000134.1 Alternate HuRef

      Range
      137133063..137270287, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC009951.10 AAX93269.1
    genomic AC010130.12 AAX93276.1
    genomic AY029472.1 AAK52081.1
    genomic CH471058.2 EAX11575.1
      EAX11576.1
      EAX11577.1
    mRNA AB011141.1 BAA25495.2
    mRNA AB015341.1 BAA34798.1
    mRNA AB056507.1 BAB40819.1
    mRNA AB193095.1 BAD60927.1
    mRNA AB193096.1 BAD60928.1
    mRNA AF085983.1 None
    mRNA AF161345.1 AAF28905.1
    mRNA AI341193.1 None
    mRNA AI858477.1 None
    mRNA AK124806.1 None
    mRNA AK294928.1 BAH11928.1
    mRNA AK308124.1 None
    mRNA AK308445.1 None
    mRNA AL118674.1 None
    mRNA BC025696.1 None
    mRNA BC025730.1 None
    mRNA BC035706.1 None
    mRNA BC037975.1 None
    mRNA BC060819.1 None
    mRNA BC127101.1 AAI27102.1
    mRNA BC127102.1 AAI27103.1
    mRNA BP218652.1 None
    mRNA BU688017.1 None
    mRNA DA305985.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    O60315.1 GenPept UniProtKB/Swiss-Prot:O60315
    Q53TD9 GenPept UniProtKB/TrEMBL:Q53TD9
    Q53TG0 GenPept UniProtKB/TrEMBL:Q53TG0
    Q60F94 GenPept UniProtKB/TrEMBL:Q60F94
    Q60F95 GenPept UniProtKB/TrEMBL:Q60F95

      Supplemental Content

      Recent activity

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...