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    araA L-arabinose isomerase [ Bacillus amyloliquefaciens DSM 7 ]

    Gene ID: 9778337, updated on 25-May-2013
    Gene symbol
    araA
    Gene description
    L-arabinose isomerase
    Locus tag
    BAMF_2685
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus amyloliquefaciens DSM 7 (strain: DSM 7, old-name: Bacillus amyloliquefaciens DSM7)
    Lineage
    Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus
    Sequence :
    NC_014551.1 (2734758..2736257, complement)

    NC_014551.1Genomic Context describing neighboring genes Neighboring gene metabolite-phosphate dehydrogenase Neighboring gene phosphatase Neighboring gene L-ribulose-5-phosphate 4-epimerase Neighboring gene L-ribulokinase Neighboring gene arabinan-endo 1,5-alpha-L-arabinase Neighboring gene endo-1,4-beta-glucanase

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. Borriss R, et al. Int J Syst Evol Microbiol, 2011 Aug. PMID 20817842.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    L-arabinose isomerase
    YP_003921281.1

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014551.1

      Range
      2734758..2736257, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_003921281.1 L-arabinose isomerase [Bacillus amyloliquefaciens DSM 7]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E1UMM5
      Conserved Domains (2) summary
      PRK02929
      Location:4 – 498
      Blast Score: 2397
      PRK02929; L-arabinose isomerase; Provisional
      cd03557
      Location:9 – 489
      Blast Score: 2228
      L-arabinose_isomerase; L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon ...
    Nucleotide Protein
    Heading Accession and Version
    genomic FN597644.1 CBI43811.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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