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    HDAC9 histone deacetylase 9 [ Homo sapiens (human) ]

    Gene ID: 9734, updated on 18-May-2013
    Official Symbol
    HDAC9provided by HGNC
    Official Full Name
    histone deacetylase 9provided by HGNC
    Primary source
    HGNC:14065
    See related
    Ensembl:ENSG00000048052; HPRD:05944; MIM:606543; Vega:OTTHUMG00000152487
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HD7; HD9; HD7b; HDAC; HDRP; MITR; HDAC7; HDAC7B; HDAC9B; HDAC9FL
    Summary
    Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alters chromosome structure and affects transcription factor access to DNA. The protein encoded by this gene has sequence homology to members of the histone deacetylase family. This gene is orthologous to the Xenopus and mouse MITR genes. The MITR protein lacks the histone deacetylase catalytic domain. It represses MEF2 activity through recruitment of multicomponent corepressor complexes that include CtBP and HDACs. This encoded protein may play a role in hematopoiesis. Multiple alternatively spliced transcripts have been described for this gene but the full-length nature of some of them has not been determined. [provided by RefSeq, Jul 2008]
    Location :
    7p21.1
    Sequence :
    Chromosome: 7; NC_000007.13 (18126572..19036993)
    See HDAC9 in Epigenomics, MapViewer

    Chromosome 7 - NC_000007.13Genomic Context describing neighboring genes Neighboring gene RNA methyltransferase like 1 pseudogene 2 Neighboring gene phosphoribosyl pyrophosphate synthetase 1-like 1 Neighboring gene microRNA 1302-6 Neighboring gene casein kinase 1, alpha 1 pseudogene Neighboring gene nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 13 Neighboring gene twist basic helix-loop-helix transcription factor 1 Neighboring gene Fer3-like (Drosophila)

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description
    Q9UKV0 P41182 BCL6    HPRD  PubMed  
    Q9UKV0 P45973 CBX5    HPRD  PubMed  
    Q9UKV0 Q13363 CTBP1    HPRD  PubMed  
    Q9UKV0 P41212 ETV6    HPRD  PubMed  
    Q9UKV0 Q13547 HDAC1    HPRD  PubMed  
    Q9UKV0 O15379 HDAC3    HPRD  PubMed  
    Q9UKV0 P56524 HDAC4    HPRD  PubMed  
    Q9UKV0 Q02078 MEF2A    HPRD  PubMed  
    Q9UKV0 O75376 NCOR1    HPRD  PubMed  
    Q9UKV0 Q96ST3 SIN3A    HPRD  PubMed  
    Q9UKV0 O75182 SIN3B    HPRD  PubMed  
    Q9UKV0 P63165 SUMO1    HPRD  PubMed  
    Q9UKV0 P61956 SUMO2    HPRD  PubMed  
    Q9UKV0 Q05516 ZBTB16    HPRD  PubMed  
    BioGRID:115083 BioGRID:121758 ANKRA2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:115083 BioGRID:107076 BCL6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:115083 BioGRID:107177 C1S    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:114106 CAMK1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:117030 CBX5    BioGRID  PubMed Affinity Capture-Western; Phenotypic Enhancement; Reconstituted Complex; Two-hybrid 
    BioGRID:115083 BioGRID:115826 CCT4    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:107480 CEBPB    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:120861 CHFR    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:107869 CTBP1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:107872 CTGF    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:108314 ELF3    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:108315 ELF4    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:108403 ESR1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:115083 BioGRID:108421 ETV6    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:117614 FBXL21    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:117657 FBXO3    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:120359 FBXO34    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:119170 FOXP3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:108829 GABRA2    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:109272 H3F3A    BioGRID  PubMed Affinity Capture-MS 
    NP_004955.2 HDAC1    BIND  PubMed An unspecified isoform of HDAC9 (MITR) interacts with HDAC1. This interaction was modelled on a demonstrated interaction between an unspecified isoform of human HDAC9 and HDAC1 from an unspecified species. 
    BioGRID:115083 BioGRID:109315 HDAC1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    NP_003874.2 HDAC3    BIND  PubMed An unspecified isoform of HDAC9 (MITR) interacts with HDAC3. This interaction was modelled on a demonstrated interaction between an unspecified isoform of human HDAC9 and HDAC3 from an unspecified species. 
    BioGRID:115083 BioGRID:114368 HDAC3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:115106 HDAC4    BioGRID  PubMed Reconstituted Complex 
    BioGRID:115083 BioGRID:115083 HDAC9    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:109514 HES1    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:117045 HEY2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:109338 HIF1A    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:122143 HIF3A    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:109341 HINT1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:130616 HIST2H3A    BioGRID  PubMed Biochemical Activity 
    BioGRID:115083 BioGRID:125732 HIST4H4    BioGRID  PubMed Biochemical Activity 
    BioGRID:115083 BioGRID:109531 HSF2    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:109928 JUN    BioGRID  PubMed Reconstituted Complex 
    BioGRID:115083 BioGRID:110443 KMT2A    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:115104 KMT2B    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:125535 LEAP2    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:115138 MAML1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:111588 MAPK10    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:111585 MAPK8    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:111587 MAPK9    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:114831 MED26    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:110369 MEF2A    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:938509 MEF2B    BioGRID  PubMed Co-crystal Structure 
    BioGRID:115083 BioGRID:110372 MEF2C    BioGRID  PubMed Two-hybrid 
    BioGRID:115083 BioGRID:119263 MEMO1    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:115001 MORF4L2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:114973 NCOR1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:113843 NRIP1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:115083 BioGRID:113717 NUP214    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:115745 NXF1    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:120112 OTUD4    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:106652 PARP1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:111327 PKD1    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:115083 BioGRID:111362 PLK1    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:115956 PLK4    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:117396 POLR1A    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:111559 PRKAR1A    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:114070 RANBP3    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:114180 RFXANK    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:971427 RL2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:112038 RPA2    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:112039 RPA3    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:107312 RUNX3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:115580 SF3A1    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:113826 SF3A2    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:115554 SF3B4    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:109072 SFN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:117439 SIN3A    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:116901 SIN3B    BioGRID  PubMed Reconstituted Complex 
    BioGRID:115083 BioGRID:123626 SLC25A28    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:132009 SLC27A1    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:112481 SMARCA4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:116597 SNW1    BioGRID  PubMed Negative Genetic 
    BioGRID:115083 BioGRID:115133 SPCS2    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:112706 SUV39H1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:112717 SYK    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:115083 BioGRID:115597 TCIRG1    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:124799 TMEM67    BioGRID  PubMed Positive Genetic 
    BioGRID:115083 BioGRID:113010 TP53    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:115083 BioGRID:117177 TRIM29    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Biochemical Activity 
    BioGRID:115083 BioGRID:113363 YWHAE    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:115083 BioGRID:113366 YWHAZ    BioGRID  PubMed Two-hybrid 
    BioGRID:115083 BioGRID:230369 Zfp521    BioGRID  PubMed Affinity Capture-Western 
    • Alcoholism, organism-specific biosystem (from KEGG)
      Alcoholism, organism-specific biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
    • Alcoholism, conserved biosystem (from KEGG)
      Alcoholism, conserved biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
    • Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants, organism-specific biosystem (from REACTOME)
      Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants, organism-specific biosystemWhen found in cis, HD and PEST domain mutations act synergistically, increasing NOTCH1 transcriptional activity up to ~40-fold, compared with up to ~10-fold and up to ~2-fold increase with HD mutatio...
    • Constitutive Signaling by NOTCH1 PEST Domain Mutants, organism-specific biosystem (from REACTOME)
      Constitutive Signaling by NOTCH1 PEST Domain Mutants, organism-specific biosystemAs NOTCH1 PEST domain is intracellular, NOTCH1 PEST domain mutants are expected to behave as the wild-type NOTCH1 with respect to ligand binding and proteolytic cleavage mediated activation of signal...
    • Disease, organism-specific biosystem (from REACTOME)
      Disease, organism-specific biosystemBiological processes are captured in Reactome by identifying the molecules (DNA, RNA, protein, small molecules) involved in them and describing the details of their interactions. From this molecular ...
    • FBXW7 Mutants and NOTCH1 in Cancer, organism-specific biosystem (from REACTOME)
      FBXW7 Mutants and NOTCH1 in Cancer, organism-specific biosystemFBXW7 (FBW7) is a component of the SCF (SKP1, CUL1, and F-box protein) ubiquitin ligase complex SCF-FBW7 which is involved in the degradation of NOTCH1 (Oberg et al. 2001, Wu et al. 2001, Fryer et al...
    • MicroRNAs in cardiomyocyte hypertrophy, organism-specific biosystem (from WikiPathways)
      MicroRNAs in cardiomyocyte hypertrophy, organism-specific biosystemThis pathway shows the role of microRNAs in the process of cardiac hypertrophy. MicroRNA targets were predicted by the TargetScan algorithm, and the predicted interactions are shown in red dashed lin...
    • NOTCH1 Intracellular Domain Regulates Transcription, organism-specific biosystem (from REACTOME)
      NOTCH1 Intracellular Domain Regulates Transcription, organism-specific biosystemNICD1 produced by activation of NOTCH1 in response to Delta and Jagged ligands (DLL/JAG) presented in trans, traffics to the nucleus where it acts as a transcription regulator. In the nucleus, NICD1 ...
    • Neural Crest Differentiation, organism-specific biosystem (from WikiPathways)
      Neural Crest Differentiation, organism-specific biosystemGene regulatory network model of cranial neural crest cell (CNCC) development, adaped from PMID: 19575671. Most interactions in the model are proposed to regulate transcription of core factors involv...
    • SIDS Susceptibility Pathways, organism-specific biosystem (from WikiPathways)
      SIDS Susceptibility Pathways, organism-specific biosystemIn this model, we provide an integrated view of Sudden Infant Death Syndrome (SIDS) at the level of implicated tissues, signaling networks and genetics. The purpose of this model is to serve as an ov...
    • Signal Transduction, organism-specific biosystem (from REACTOME)
      Signal Transduction, organism-specific biosystemSignal transduction is a process in which extracellular signals elicit changes in cell state and activity. Transmembrane receptors sense changes in the cellular environment by binding ligands, such a...
    • Signaling by NOTCH, organism-specific biosystem (from REACTOME)
      Signaling by NOTCH, organism-specific biosystemThe Notch Signaling Pathway (NSP) is a highly conserved pathway for cell-cell communication. NSP is involved in the regulation of cellular differentiation, proliferation, and specification. For exam...
    • Signaling by NOTCH1, organism-specific biosystem (from REACTOME)
      Signaling by NOTCH1, organism-specific biosystemNOTCH1 functions as both a transmembrane receptor presented on the cell surface and as a transcriptional regulator in the nucleus.NOTCH1 receptor presented on the plasma membrane is activated by a me...
    • Signaling by NOTCH1 HD Domain Mutants in Cancer, organism-specific biosystem (from REACTOME)
      Signaling by NOTCH1 HD Domain Mutants in Cancer, organism-specific biosystemNOTCH1 heterodimerization domain mutations are frequently found in T-cell acute lymphoblastic leukemia (T-ALL) (Weng et al. 2004) and result in constitutive activity of NOTCH1 mutants (Malecki et al....
    • Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer, organism-specific biosystem (from REACTOME)
      Signaling by NOTCH1 HD+PEST Domain Mutants in Cancer, organism-specific biosystemMutations in the heterodimerization domain (HD) and PEST domain of NOTCH1 are frequently found in cis in T-cell acute lymphoblastic leukemia. While HD mutations alone result in up to ~10-fold increas...
    • Signaling by NOTCH1 PEST Domain Mutants in Cancer, organism-specific biosystem (from REACTOME)
      Signaling by NOTCH1 PEST Domain Mutants in Cancer, organism-specific biosystemNOTCH1 PEST domain mutations are frequently found in T-cell acute lymphoblastic leukemia (T-ALL). PEST domain mutations interfere with ubiquitination-mediated NOTCH1 downregulation and result in prol...
    • Signaling by NOTCH1 in Cancer, organism-specific biosystem (from REACTOME)
      Signaling by NOTCH1 in Cancer, organism-specific biosystemHuman NOTCH1 was cloned as a chromosome 9 gene, translocated to the T-cell beta receptor (TCBR) promoter on chromosome 7 in T-cell acute lymphoblastic leukemia (T-ALL) (Ellisen et al. 1991). This tra...
    • Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant, organism-specific biosystem (from REACTOME)
      Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation Mutant, organism-specific biosystemHuman NOTCH1 was cloned as a chromosome 9 gene, translocated to the T-cell beta receptor (TCBR) promoter on chromosome 7 in T-cell acute lymphoblastic leukemia (T-ALL) (Ellisen et al. 1991). The tran...
    • Signaling events mediated by HDAC Class I, organism-specific biosystem (from Pathway Interaction Database)
      Signaling events mediated by HDAC Class I, organism-specific biosystem
      Signaling events mediated by HDAC Class I
    • Signaling events mediated by HDAC Class II, organism-specific biosystem (from Pathway Interaction Database)
      Signaling events mediated by HDAC Class II, organism-specific biosystem
      Signaling events mediated by HDAC Class II
    • Viral carcinogenesis, organism-specific biosystem (from KEGG)
      Viral carcinogenesis, organism-specific biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...
    • Viral carcinogenesis, conserved biosystem (from KEGG)
      Viral carcinogenesis, conserved biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...

    Markers

    Homology

    Clone Names

    • KIAA0744, DKFZp779K1053

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    NAD-dependent histone deacetylase activity (H3-K14 specific) IEA
    Inferred from Electronic Annotation
    more info
     
    NAD-dependent histone deacetylase activity (H3-K18 specific) IEA
    Inferred from Electronic Annotation
    more info
     
    NAD-dependent histone deacetylase activity (H3-K9 specific) IEA
    Inferred from Electronic Annotation
    more info
     
    NAD-dependent histone deacetylase activity (H4-K16 specific) IEA
    Inferred from Electronic Annotation
    more info
     
    histone deacetylase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    NOT histone deacetylase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    histone deacetylase binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    histone deacetylase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein deacetylase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein kinase C binding IPI
    Inferred from Physical Interaction
    more info
     
    repressing transcription factor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    repressing transcription factor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    repressing transcription factor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcription corepressor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcription factor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    B cell activation TAS
    Traceable Author Statement
    more info
    PubMed 
    B cell differentiation TAS
    Traceable Author Statement
    more info
    PubMed 
    Notch signaling pathway TAS
    Traceable Author Statement
    more info
     
    cellular response to insulin stimulus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    heart development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    histone H3 deacetylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    histone H4 deacetylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    histone deacetylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    inflammatory response TAS
    Traceable Author Statement
    more info
    PubMed 
    negative regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    negative regulation of transcription, DNA-dependent IDA
    Inferred from Direct Assay
    more info
    PubMed 
    peptidyl-lysine deacetylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of cell migration involved in sprouting angiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of skeletal muscle fiber development ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of striated muscle cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm TAS
    Traceable Author Statement
    more info
    PubMed 
    histone deacetylase complex TAS
    Traceable Author Statement
    more info
    PubMed 
    histone methyltransferase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus NAS
    Non-traceable Author Statement
    more info
     
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    histone deacetylase 9
    Names
    histone deacetylase 9
    histone deacetylase 7B
    histone deacetylase 4/5-related protein
    MEF-2 interacting transcription repressor (MITR) protein
    NP_001191073.1
    NP_001191074.1
    NP_001191075.1
    NP_001191076.1
    NP_001191077.1
    NP_055522.1
    NP_478056.1
    NP_848510.1
    NP_848512.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_023250.1 RefSeqGene

      Range
      5001..506625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001204144.1NP_001191073.1  histone deacetylase 9 isoform 6

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) differs in the 5' UTR and coding sequence, the 3' UTR and coding sequence, and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (6) is longer at the N-terminus, has a shorter and distinct C-terminus, and lacks an internal segment compared to isoform 1.
      Source sequence(s)
      AK304298, BC150328
      Consensus CDS
      CCDS56465.1
      UniProtKB/Swiss-Prot
      Q9UKV0
      Conserved Domains (1) summary
      cd10163
      Location:107129
      Blast Score: 99
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    2. NM_001204145.1NP_001191074.1  histone deacetylase 9 isoform 7

      Status: REVIEWED

      Description
      Transcript Variant: This variant (7) has an extended 5' UTR, differs in the 3' UTR and coding sequence, and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (7) has a shorter and distinct C-terminus and lacks an internal segment compared to isoform 1.
      Source sequence(s)
      AB018287, AK297404, BC150328
      Consensus CDS
      CCDS56466.1
      UniProtKB/TrEMBL
      B7Z4I4
      UniProtKB/TrEMBL
      F8W9E0
      UniProtKB/Swiss-Prot
      Q9UKV0
      Conserved Domains (1) summary
      cd10163
      Location:6587
      Blast Score: 96
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    3. NM_001204146.1NP_001191075.1  histone deacetylase 9 isoform 8

      Status: REVIEWED

      Description
      Transcript Variant: This variant (8) has an extended 5' UTR, differs in the 3' UTR and coding sequence, lacks an alternate in-frame exon, and uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (8) has a shorter and distinct C-terminus, lacks an internal segment, and contains an alternate short internal segment compared to isoform 1.
      Source sequence(s)
      AB018287, AC002433, AK316109, BC150328
      UniProtKB/TrEMBL
      B7Z3P7
      UniProtKB/Swiss-Prot
      Q9UKV0
      Related
      ENSP00000384017, OTTHUMP00000201768, ENST00000406072, OTTHUMT00000326408
      Conserved Domains (1) summary
      cd10163
      Location:6587
      Blast Score: 96
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    4. NM_001204147.1NP_001191076.1  histone deacetylase 9 isoform 9

      Status: REVIEWED

      Description
      Transcript Variant: This variant (9) differs in the 5' UTR and coding sequence, the 3' UTR and coding sequence, and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (9) is shorter at the N-terminus, has a shorter and distinct C-terminus, and lacks an internal segment compared to isoform 1.
      Source sequence(s)
      AK304343, AK304410, BC150328, DC369193
      Consensus CDS
      CCDS56468.1
      UniProtKB/TrEMBL
      B7Z928
      UniProtKB/TrEMBL
      B7Z940
      UniProtKB/TrEMBL
      E7EX34
      UniProtKB/Swiss-Prot
      Q9UKV0
      Conserved Domains (1) summary
      cd10163
      Location:3456
      Blast Score: 95
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    5. NM_001204148.1NP_001191077.1  histone deacetylase 9 isoform 10

      Status: REVIEWED

      Description
      Transcript Variant: This variant (10) differs in the 5' UTR and coding sequence, the 3' UTR and coding sequence, and uses an alternate in-frame splice junction at the 5' end of an exon compared to variant 1. The resulting isoform (10) is shorter at the N-terminus, has a shorter and distinct C-terminus, and contains an alternate internal segment compared to isoform 1.
      Source sequence(s)
      AC002124, AK304343, AK304410, BC150328, DC369193
      Consensus CDS
      CCDS56467.1
      UniProtKB/TrEMBL
      B7Z928
      UniProtKB/TrEMBL
      B7Z940
      UniProtKB/TrEMBL
      C9JS87
      UniProtKB/Swiss-Prot
      Q9UKV0
      Conserved Domains (1) summary
      cd10163
      Location:3456
      Blast Score: 96
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    6. NM_014707.1NP_055522.1  histone deacetylase 9 isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks multiple 3' exons and has an alternate 3' segment including the coding region and UTR, compared to variant 1. The resulting isoform 3, also known as HDRP, has a much shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AB018287
      Consensus CDS
      CCDS47557.1
      UniProtKB/Swiss-Prot
      Q9UKV0
      Related
      ENSP00000384382, OTTHUMP00000201767, ENST00000405010, OTTHUMT00000326406
      Conserved Domains (1) summary
      cd10163
      Location:6587
      Blast Score: 97
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    7. NM_058176.2NP_478056.1  histone deacetylase 9 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the predominant isoform (1).
      Source sequence(s)
      AA405905, AB018287, AY032737
      Consensus CDS
      CCDS47555.1
      UniProtKB/Swiss-Prot
      Q9UKV0
      Related
      ENSP00000410337, OTTHUMP00000225262, ENST00000432645, OTTHUMT00000376176
      Conserved Domains (3) summary
      COG0123
      Location:631984
      Blast Score: 648
      AcuC; Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
      cd10163
      Location:6587
      Blast Score: 114
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
      cd10009
      Location:6311009
      Blast Score: 2032
      HDAC9; Histone deacetylase 9
    8. NM_178423.1NP_848510.1  histone deacetylase 9 isoform 4

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) has an alternate 3' sequence including the coding region and UTR, compared to variant 1. The resulting isoform 4, also known as HDAC9fl, has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AJ459808
      Consensus CDS
      CCDS47554.1
      UniProtKB/Swiss-Prot
      Q9UKV0
      Related
      ENSP00000384657, OTTHUMP00000201766, ENST00000406451, OTTHUMT00000326405
      Conserved Domains (3) summary
      COG0123
      Location:631984
      Blast Score: 648
      AcuC; Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
      cd10163
      Location:6587
      Blast Score: 113
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
      cd10009
      Location:6311009
      Blast Score: 2041
      HDAC9; Histone deacetylase 9
    9. NM_178425.2NP_848512.1  histone deacetylase 9 isoform 5

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) has an alternate 3' sequence including the coding region and UTR, compared to variant 1. The resulting isoform 5 has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AB018287, AJ459808, AY197371
      Consensus CDS
      CCDS47553.1
      UniProtKB/Swiss-Prot
      Q9UKV0
      Conserved Domains (3) summary
      COG0123
      Location:634987
      Blast Score: 648
      AcuC; Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
      cd10163
      Location:6587
      Blast Score: 113
      ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
      cd10009
      Location:6341012
      Blast Score: 2041
      HDAC9; Histone deacetylase 9

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000007.13 Reference GRCh37.p10 Primary Assembly

      Range
      18126572..19036993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000139.1 Alternate HuRef

      Range
      18012000..18921632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CRA_TCAGchr7v2

    Genomic

    1. AC_000068.1 Alternate CRA_TCAGchr7v2

      Range
      18254965..19088496
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018918.1 Alternate CHM1_1.0

      Range
      18100851..19011240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_058177.2: Suppressed sequence

      Description
      NM_058177.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

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