Sign in to NCBI

Display Settings:

Format

Send to:

Choose Destination
We are sorry, but NCBI web applications do not support your browser and may not function properly. More information

    rluD pseudouridylate synthase [ Bacillus subtilis subsp. spizizenii str. W23 ]

    Gene ID: 9722580, updated on 11-May-2013
    Gene symbol
    rluD
    Gene description
    pseudouridylate synthase
    Locus tag
    BSUW23_07960
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bacillus subtilis subsp. spizizenii str. W23 (strain: W23, sub-species: spizizenii)
    Lineage
    Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus
    Sequence :
    NC_014479.1 (1572462..1573373)

    NC_014479.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene lipoprotein signal peptidase Neighboring gene bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase Neighboring gene uracil permease

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. The genome sequence of Bacillus subtilis subsp. spizizenii W23: insights into speciation within the B. subtilis complex and into the history of B. subtilis genetics. Zeigler DR. Microbiology, 2011 Jul. PMID 21527469.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    pseudouridylate synthase

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014479.1

      Range
      1572462..1573373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_003865949.1 pseudouridylate synthase [Bacillus subtilis subsp. spizizenii str. W23]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E0TTL4
      Conserved Domains (3) summary
      TIGR00005
      Location:10 – 300
      Blast Score: 1058
      rluA_subfam; pseudouridine synthase, RluA family
      cd02869
      Location:89 – 273
      Blast Score: 635
      PseudoU_synth_RluCD_like; Pseudouridine synthase, RsuA/RluD family
      cd00165
      Location:15 – 93
      Blast Score: 164
      S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002183.1 ADM37640.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

      Related sites

      Feedback

      Subscription

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...