Clocel_2109 spermidine synthase [Clostridium cellulovorans 743B] - Gene

Summary

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Gene symbol: Clocel_2109
Gene description: spermidine synthase
Locus tag: Clocel_2109
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Clostridium cellulovorans 743B (strain: 743B)
Lineage: Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium

Genomic context

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Sequence :: NC_014393.1 (2514165..2514995)

NC_014393.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence

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Bibliography

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GeneRIFs: Gene References Into Functions What's a GeneRIF?

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Pathways from BioSystems

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Arginine and proline metabolism, organism-specific biosystem (from KEGG)
Arginine and proline metabolism, organism-specific biosystem
Arginine and proline metabolism
Arginine and proline metabolism, conserved biosystem (from KEGG)
Arginine and proline metabolism, conserved biosystem
Arginine and proline metabolism
Cysteine and methionine metabolism, organism-specific biosystem (from KEGG)
Cysteine and methionine metabolism, organism-specific biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
Cysteine and methionine metabolism, conserved biosystem (from KEGG)
Cysteine and methionine metabolism, conserved biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
Glutathione metabolism, organism-specific biosystem (from KEGG)
Glutathione metabolism, organism-specific biosystem
Glutathione metabolism
Glutathione metabolism, conserved biosystem (from KEGG)
Glutathione metabolism, conserved biosystem
Glutathione metabolism
beta-Alanine metabolism, organism-specific biosystem (from KEGG)
beta-Alanine metabolism, organism-specific biosystem
beta-Alanine metabolism
beta-Alanine metabolism, conserved biosystem (from KEGG)
beta-Alanine metabolism, conserved biosystem
beta-Alanine metabolism

General gene information

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General protein information

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Names: spermidine synthase

YP_003843616.1

KEGG: ckr:CKR_2795 hypothetical protein~TIGRFAM: spermidine synthase~PFAM: Spermine synthase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_014393.1

Range

2514165..2514995

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

YP_003843616.1 spermidine synthase [Clostridium cellulovorans 743B]

Status: PROVISIONAL

UniProtKB/TrEMBL

D9SMY6

Conserved Domains (2) summary

cd02440
Location:90 – 191
Blast Score: 103

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

PRK00811
Location:1 – 276
Blast Score: 1026

PRK00811; spermidine synthase; Provisional

Nucleotide		Protein
Heading	Accession and Version	Protein
genomic	CP002160.1	ADL51852.1
genomic	NZ_BABR01000397.1	ZP_07632846.1

Protein Accession	Links
Protein Accession	GenPept Link	UniProtKB Link
ZP_04805929.1	GenPept

Additional links

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Gene LinkOut

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Molecular Biology Databases

Kyoto Encyclopedia of Genes and Genomes

PATRIC: PathoSystems Resource Integration Center

VBICloCel81632_2163

Gene

Genes and mapped phenotypes

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Clocel_2109 spermidine synthase [ Clostridium cellulovorans 743B ]

Summary

Genomic context

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Pathways from BioSystems

General gene information

General protein information

NCBI Reference Sequences (RefSeq)

Genome Annotation

Reference assembly

Genomic

mRNA and Protein(s)

Additional links

Gene LinkOut

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