RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001256336.1 → NP_001243265.1 chromodomain-helicase-DNA-binding protein 1-like isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate exon in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 2) is shorter when it is compared to isoform 1.
- Source sequence(s)
-
AK026183, AK298424, BC001171, CB153921, DA007597, DA155685
- Conserved Domains (4) summary
-
- cd03331
Location:616 – 766
Blast Score: 623
- Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
- cd00046
Location:7 – 87
Blast Score: 97
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:261 – 367
Blast Score: 214
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- PLN03142
Location:16 – 442
Blast Score: 1003
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
-
NM_001256337.1 → NP_001243266.1 chromodomain-helicase-DNA-binding protein 1-like isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks several exons in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 4) is shorter when it is compared to isoform 1.
- Source sequence(s)
-
AK026183, AK293157, BC001171, CN255654, DA007597, DA155685
- Conserved Domains (3) summary
-
- cd03331
Location:435 – 585
Blast Score: 621
- Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
- cd00079
Location:80 – 186
Blast Score: 213
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- PLN03142
Location:1 – 261
Blast Score: 647
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
-
NM_001256338.1 → NP_001243267.1 chromodomain-helicase-DNA-binding protein 1-like isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) lacks several exons in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 5) is shorter when it is compared to isoform 1.
- Source sequence(s)
-
BC001171, BC077717, DA007597, DA155685, R46126
- UniProtKB/Swiss-Prot
-
Q86WJ1
- Conserved Domains (3) summary
-
- cd03331
Location:512 – 662
Blast Score: 621
- Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
- cd00079
Location:157 – 263
Blast Score: 212
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- PLN03142
Location:44 – 338
Blast Score: 751
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
-
NM_004284.4 → NP_004275.4 chromodomain-helicase-DNA-binding protein 1-like isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and it encodes the longest protein (isoform 1).
- Source sequence(s)
-
AF537213, BC001171, DA007597, DA155685, R46126
- Consensus CDS
-
CCDS927.1
- UniProtKB/Swiss-Prot
-
Q86WJ1
- Related
- ENSP00000358262, OTTHUMP00000016308, ENST00000369258, OTTHUMT00000040377
- Conserved Domains (4) summary
-
- cd03331
Location:716 – 866
Blast Score: 626
- Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
- cd00046
Location:65 – 187
Blast Score: 190
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- cd00079
Location:361 – 467
Blast Score: 213
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- PLN03142
Location:46 – 542
Blast Score: 1180
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
-
NM_024568.2 → NP_078844.2 chromodomain-helicase-DNA-binding protein 1-like isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses a different splice site in the 5' coding region which results in translation from a downstream start codon, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1.
- Source sequence(s)
-
AK027631, AK223496, BC001171, CN255647, DA007597, DA155685, DA745071, R46126
- Conserved Domains (4) summary
-
- cd03331
Location:603 – 753
Blast Score: 624
- Macro_Poa1p_like_SNF2; Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ...
- cd00079
Location:248 – 354
Blast Score: 213
- HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
- PLN03142
Location:2 – 429
Blast Score: 1003
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- cl09099
Location:1 – 74
Blast Score: 95
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
RNA
-
NR_046070.1 RNA Sequence
- Description
- Transcript Variant: This variant (6) lacks two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay.(NMD).
- Source sequence(s)
-
BC001171, BC043501, CN255649, DA007597, DA155685, R46126
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000001.10 Reference GRCh37.p5 Primary Assembly
- Range
- 146714291..146767443
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000133.1 Alternate HuRef
- Range
- 120126695..120180295
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)