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yebE DUF533 domain-containing inner membrane protein YebE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946355, updated on 6-Oct-2023

Summary

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Gene symbol
yebE
Gene description
DUF533 domain-containing inner membrane protein YebE
Primary source
ASAP:ABE-0006137
Locus tag
b1846
See related
ECOCYC:EG11806
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1847
Summary
Deletion mutant available from Kim Lewis upon request. [More information is available at EcoGene: EG11806]. YebE is an inner membrane protein with one predicted transmembrane domain. [More information is available at EcoCyc: EG11806].
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Genomic context

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Sequence:
NC_000913.3 (1929048..1929707, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative carbon-nitrogen hydrolase family protein YobB Neighboring gene exonuclease X Neighboring gene oligopeptidase B Neighboring gene secreted protein YebF Neighboring gene DNA damage-inducible protein YebG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of thioredoxin-targeted proteins in Escherichia coli. Kumar JK, et al. Proc Natl Acad Sci U S A, 2004 Mar 16. PMID 15004283, Free PMC Article
  2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  3. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  4. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
  5. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. Itoh T, et al. DNA Res, 1996 Dec 31. PMID 9097040

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
DUF533 domain-containing inner membrane protein YebE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1929048..1929707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416360.1 DUF533 domain-containing inner membrane protein YebE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416360.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AHZ2
    Conserved Domains (1) summary
    COG2979
    Location:1 → 217
    YebE; Uncharacterized membrane protein YebE, DUF533 family [Function unknown]
Nucleotide Protein
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