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ydjM inner membrane protein YdjM [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945644, updated on 4-Apr-2024

Summary

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Gene symbol
ydjM
Gene description
inner membrane protein YdjM
Primary source
ASAP:ABE-0005768
Locus tag
b1728
See related
ECOCYC:G6933
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1726
Summary
LexA regulon. [More information is available at EcoGene: EG13989]. YdjM is an inner membrane protein. [More information is available at EcoCyc: G6933].
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Genomic context

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Sequence:
NC_000913.3 (1810211..1810801)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YniB Neighboring gene hexitol phosphatase B Neighboring gene cystine/sulfocysteine:cation symporter Neighboring gene protein YdjO

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of additional genes belonging to the LexA regulon in Escherichia coli. Fernández De Henestrosa AR, et al. Mol Microbiol, 2000 Mar. PMID 10760155
  2. LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strains. Van Dyk TK, et al. J Bacteriol, 2001 Oct. PMID 11544210, Free PMC Article
  3. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
inner membrane protein YdjM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1810211..1810801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416242.6 inner membrane protein YdjM [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416242.6

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AA87JK82
    Conserved Domains (1) summary
    PRK11648
    Location:1 → 195
    PRK11648; metal-dependent hydrolase
Nucleotide Protein
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