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yabI DedA family protein YabI [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 944783, updated on 27-Nov-2023

Summary

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Gene symbol
yabI
Gene description
DedA family protein YabI
Primary source
ASAP:ABE-0000241
Locus tag
b0065
See related
ECOCYC:EG11571
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0066
Summary
YabI is a member of the DedA family of inner membrane proteins . [More information is available at EcoCyc: EG11571].
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Genomic context

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Sequence:
NC_000913.3 (71351..72115)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ribulokinase Neighboring gene DNA-binding transcriptional dual regulator AraC Neighboring gene thiamine ABC transporter ATP binding subunit Neighboring gene thiamine ABC transporter membrane subunit Neighboring gene thiamine ABC transporter periplasmic binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli. Reitzer L, et al. Microbiol Mol Biol Rev, 2001 Sep. PMID 11528004, Free PMC Article
  2. Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation. Byrne RT, et al. J Bacteriol, 2014 Oct. PMID 25049088, Free PMC Article
  3. Multiple pathways for regulation of sigmaS (RpoS) stability in Escherichia coli via the action of multiple anti-adaptors. Bougdour A, et al. Mol Microbiol, 2008 Apr. PMID 18383615
  4. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
  5. Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region. Yura T, et al. Nucleic Acids Res, 1992 Jul 11. PMID 1630901, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within FtsZ-dependent cytokinesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to ionizing radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DedA family protein YabI

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    71351..72115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414607.1 DedA family protein YabI [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414607.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7M3TQY7
    Conserved Domains (1) summary
    COG0586
    Location:8 → 206
    DedA; Uncharacterized membrane protein DedA, SNARE-associated domain [Function unknown]
Nucleotide Protein
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Gene LinkOut

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Other Literature Sources
Molecular Biology Databases