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    RECQL4 RecQ protein-like 4 [ Homo sapiens (human) ]

    Gene ID: 9401, updated on 22-May-2013
    Official Symbol
    RECQL4provided by HGNC
    Official Full Name
    RecQ protein-like 4provided by HGNC
    Primary source
    HGNC:9949
    See related
    HPRD:04805; MIM:603780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RECQ4
    Summary
    The protein encoded by this gene is a DNA helicase that belongs to the RecQ helicase family. DNA helicases unwind double-stranded DNA into single-stranded DNAs and may modulate chromosome segregation. This gene is predominantly expressed in thymus and testis. Mutations in this gene are associated with Rothmund-Thomson, RAPADILINO and Baller-Gerold syndromes. [provided by RefSeq, Jan 2010]
    Location :
    8q24.3
    Sequence :
    Chromosome: 8; NC_000008.10 (145736667..145743210, complement)
    See RECQL4 in Epigenomics, MapViewer

    Chromosome 8 - NC_000008.10Genomic Context describing neighboring genes Neighboring gene glutamic-pyruvate transaminase (alanine aminotransferase) Neighboring gene major facilitator superfamily domain containing 3 Neighboring gene leucine rich repeat containing 14 Neighboring gene leucine rich repeat containing 24 Neighboring gene chromosome 8 open reading frame 82

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Baller-Gerold syndrome

    Summary from GeneReviews: Baller-Gerold Syndrome Go to GeneReviews

    Disease Characteristics
    Baller-Gerold syndrome (BGS) is characterized by coronal craniosynostosis, manifest as abnormal shape of the skull (brachycephaly) with ocular proptosis and bulging forehead; radial ray defect, manifest as oligodactyly (reduction in number of digits), aplasia or hypoplasia of the thumb, and/or aplasia or hypoplasia of the radius; growth retardation and poikiloderma. Findings in individuals with BGS overlap with those of Rothmund-Thomson syndrome (RTS) and RAPADILINO syndrome, also caused by mutations in RECQL4. RTS is characterized by poikiloderma; sparse hair, eyelashes, and/or eyebrows/lashes; small stature; skeletal and dental abnormalities; cataracts; and an increased risk for cancer, especially osteosarcoma. RAPADILINO syndrome is an acronym for RAdial ray defect; PAtellae hypoplasia or aplasia and cleft or highly arched PAlate; DIarrhea and DIslocated joints; LIttle size and LImb malformation; NOse slender and NOrmal intelligence.
    Diagnosis Testing
    The diagnosis of BGS is based on clinical findings. RECQL4 is the only gene currently known to be associated with BGS. Sequence analysis of the exons and the short introns of RECQL4 has detected mutations in 100% of the limited number of persons with BGS tested to date.
    Genetic Counseling
    Baller-Gerold syndrome is inherited in an autosomal recessive manner. The parents of an affected child are obligate heterozygotes and therefore carry one mutant allele. Heterozygotes (carriers) are asymptomatic. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal diagnosis for pregnancies at increased risk is possible if both disease-causing alleles in the family have been identified.
    References

    Rothmund-Thomson syndrome

    Summary from GeneReviews: Rothmund-Thomson Syndrome Go to GeneReviews

    Disease Characteristics
    Rothmund-Thomson syndrome (RTS) is characterized by poikiloderma; sparse hair, eyelashes, and/or eyebrows/lashes; small stature; skeletal and dental abnormalities; cataracts; and an increased risk for cancer, especially osteosarcoma. The skin is typically normal at birth; the rash of RTS develops between age three and six months as erythema, swelling, and blistering on the face and subsequently spreads to the buttocks and extremities. The rash evolves over months to years into the chronic pattern of reticulated hypo- and hyperpigmentation, punctate atrophy, and telangiectases, collectively known as poikiloderma. Hyperkeratotic lesions occur in approximately one-third of individuals. Skeletal abnormalities include dysplasias, absent or malformed bones (such as absent radii), osteopenia, and delayed bone formation.
    Diagnosis Testing
    The diagnosis of RTS is established by clinical findings - in particular, the characteristic rash. Routine cytogenetic studies of lymphocytes or skin fibroblasts may reveal mosaic abnormalities of chromosome 8, such as trisomy 8, partial 8q duplication, and tetrasomy 8q, which have been seen in individuals with RTS but are not diagnostic. Skin biopsy may show poikilodermatous changes, which are nonspecific but consistent with RTS. RECQL4 is the only gene associated with RTS to date; although evidence suggests genetic heterogeneity, no other locus for RTS has been identified. Molecular testing of RECQL4 is clinically available.
    Genetic Counseling
    RTS is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3. Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible if the disease-causing mutations in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    NC_000008.9 NP_004955.2 HDAC1    BIND  PubMed HDAC1 interacts with the RECQL4 (RECQ4) promoter. 
    NC_000008.9 NP_612482.2 SP1    BIND  PubMed SP1 interacts with the RECQL4 (RECQ4) promoter. 
    NC_000008.9 NP_000537.2 TP53    BIND  PubMed TP53 (p53) interacts with the RECQL4 (RECQ4) promoter. 
    NC_000008.9     BIND  PubMed RNA polymerase II interacts with the RECQL4 (RECQ4) promoter. 
    O94761 O95084 PRSS23    HPRD  PubMed  
    BioGRID:114798 BioGRID:122379 ACD    BioGRID  PubMed Two-hybrid 
    BioGRID:114798 BioGRID:108347 EP300    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:114798 BioGRID:117417 POT1    BioGRID  PubMed Two-hybrid 
    BioGRID:114798 BioGRID:116279 PRSS23    BioGRID  PubMed Two-hybrid 
    BioGRID:114798 BioGRID:114797 RECQL5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114798 BioGRID:219759 Recql4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114798 BioGRID:116983 SIRT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114798 BioGRID:112872 TERF1    BioGRID  PubMed Two-hybrid 
    BioGRID:114798 BioGRID:119942 TERF2IP    BioGRID  PubMed Two-hybrid 
    BioGRID:114798 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114798 BioGRID:128238 UBR1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-fractionation 
    BioGRID:114798 BioGRID:116896 UBR2    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ATP-dependent 3'-5' DNA helicase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    bubble DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    DNA duplex unwinding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA recombination IEA
    Inferred from Electronic Annotation
    more info
     
    DNA repair TAS
    Traceable Author Statement
    more info
    PubMed 
    DNA replication IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA strand renaturation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    multicellular organismal development TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    ATP-dependent DNA helicase Q4
    Names
    ATP-dependent DNA helicase Q4
    DNA helicase, RecQ-like type 4
    DNA helicase, RecQ-like, type 4
    NP_004251.3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016430.1 RefSeqGene

      Range
      5001..11543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_004260.3NP_004251.3  ATP-dependent DNA helicase Q4

      Status: REVIEWED

      Source sequence(s)
      AB006532, BC013277, CN286057
      UniProtKB/Swiss-Prot
      O94761
      Conserved Domains (4) summary
      cd00046
      Location:497626
      Blast Score: 128
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00079
      Location:685817
      Blast Score: 244
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      COG0514
      Location:465849
      Blast Score: 705
      RecQ; Superfamily II DNA helicase [DNA replication, recombination, and repair]
      pfam11719
      Location:660
      Blast Score: 129
      Drc1-Sld2; DNA replication and checkpoint protein

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000008.10 Reference GRCh37.p10 Primary Assembly

      Range
      145736667..145743210, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000140.1 Alternate HuRef

      Range
      140849825..140856695, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018919.1 Alternate CHM1_1.0

      Range
      146009586..146016126, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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