These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_030373.1 RefSeqGene
- Range
- 5001..41737
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001206774.1 → NP_001193703.1 general transcription factor 3C polypeptide 3 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks multiple exons from the 3' end and has an alternate 3' segment, compared to variant 1. The resulting isoform (2) has a much shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AF465407, DB078021
- Consensus CDS
-
CCDS56153.1
- UniProtKB/Swiss-Prot
-
Q9Y5Q9
- Related
- ENSP00000386465, OTTHUMP00000205595, ENST00000409364, OTTHUMT00000335031
- Conserved Domains (2) summary
-
- cd00189
Location:189 – 283
Blast Score: 145
- TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
- TIGR02917
Location:146 – 346
Blast Score: 135
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
-
NM_012086.4 → NP_036218.1 general transcription factor 3C polypeptide 3 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AC012486, AK314718, BU622956, DB078021
- Consensus CDS
-
CCDS2316.1
- UniProtKB/Swiss-Prot
-
Q9Y5Q9
- Related
- ENSP00000263956, OTTHUMP00000163622, ENST00000263956, OTTHUMT00000256104
- Conserved Domains (4) summary
-
- cd00189
Location:189 – 283
Blast Score: 135
- TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
- TIGR02917
Location:146 – 346
Blast Score: 130
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- pfam13432
Location:425 – 489
Blast Score: 82
- TPR_16; Tetratricopeptide repeat
- cl02429
Location:812 – 842
Blast Score: 82
- TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000002.11 Reference GRCh37.p5 Primary Assembly
- Range
- 197627960..197664492, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000134.1 Alternate HuRef
- Range
- 189480549..189517101, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)