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LOC9326266 ubiquitin carboxyl-terminal hydrolase 15 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9326266, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9326266
Gene description
ubiquitin carboxyl-terminal hydrolase 15
Locus tag
ARALYDRAFT_889106
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
UBP15
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Genomic context

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See LOC9326266 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302555.1 (7151960..7157250, complement)

NW_003302555.1Genomic Context describing neighboring genes Neighboring gene probable prefoldin subunit 5 Neighboring gene heme-binding protein 2 Neighboring gene cationic amino acid transporter 8, vacuolar Neighboring gene coiled-coil domain-containing protein 94 homolog Neighboring gene interactor of constitutive active ROPs 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302555 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 15
Names
ubiquitin-specific protease 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302555.1 Reference v.1.0 Primary Assembly

    Range
    7151960..7157250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021011437.1 → XP_020867096.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

    Conserved Domains (2) summary
    cd02661
    Location:445 → 750
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam01753
    Location:130 → 167
    zf-MYND; MYND finger

  2. XM_002892889.2 → XP_002892935.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X2

    See identical proteins and their annotated locations for XP_002892935.1

    UniProtKB/TrEMBL
    D7KEL9
    Conserved Domains (2) summary
    cd02661
    Location:441 → 746
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam01753
    Location:130 → 167
    zf-MYND; MYND finger

  3. XM_021011440.1 → XP_020867099.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X2

    UniProtKB/TrEMBL
    D7KEL9
    Conserved Domains (2) summary
    cd02661
    Location:441 → 746
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam01753
    Location:130 → 167
    zf-MYND; MYND finger

  4. XM_021011438.1 → XP_020867097.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

    Conserved Domains (2) summary
    cd02661
    Location:445 → 750
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam01753
    Location:130 → 167
    zf-MYND; MYND finger

  5. XM_021011439.1 → XP_020867098.1  ubiquitin carboxyl-terminal hydrolase 15 isoform X1

    Conserved Domains (2) summary
    cd02661
    Location:445 → 750
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam01753
    Location:130 → 167
    zf-MYND; MYND finger
Nucleotide Protein
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