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LOC9304330 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [ Arabidopsis lyrata subsp. lyrata ]

Gene ID: 9304330, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9304330
Gene description
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
Locus tag
ARALYDRAFT_493429
Gene type
protein coding
RefSeq status
MODEL
Organism
Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATARD1
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (13728265..13730002)

NW_003302549.1Genomic Context describing neighboring genes Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 4 Neighboring gene protein TIFY 4B Neighboring gene protein TIFY 4A Neighboring gene 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acireductone dioxygenase [iron(II)-requiring] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-methionine salvage from methylthioadenosine IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference v.1.0 Primary Assembly

Genomic

  1. NW_003302549.1 Reference v.1.0 Primary Assembly

    Range
    13728265..13730002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002868212.2 → XP_002868258.1  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

    See identical proteins and their annotated locations for XP_002868258.1

    UniProtKB/TrEMBL
    D7MGX2
    Conserved Domains (1) summary
    pfam03079
    Location:14 → 168
    ARD; ARD/ARD' family
Nucleotide Protein
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