These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_005451.3 → NP_005442.2 PDZ and LIM domain protein 7 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BC001093, BG714861
- Consensus CDS
-
CCDS4422.1
- UniProtKB/Swiss-Prot
-
Q9NR12
- Related
- ENSP00000348099, OTTHUMP00000161442, ENST00000355841, OTTHUMT00000253423
- Conserved Domains (5) summary
-
- cd00992
Location:5 – 79
Blast Score: 147
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- PHA03247
Location:86 – 254
Blast Score: 98
- PHA03247; large tegument protein UL36; Provisional
- cd09452
Location:282 – 333
Blast Score: 290
- LIM1_Enigma; The first LIM domain of Enigma
- cd09456
Location:341 – 392
Blast Score: 301
- LIM2_Enigma; The second LIM domain of Enigma
- cd09458
Location:400 – 454
Blast Score: 319
- LIM3_Enigma; The third LIM domain of Enigma
-
NM_203352.1 → NP_976227.1 PDZ and LIM domain protein 7 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 2 which is shorter than isoform 1.
- Source sequence(s)
-
AF345905, BC001093, BG772677
- Consensus CDS
-
CCDS4423.1
- UniProtKB/Swiss-Prot
-
Q9NR12
- Related
- ENSP00000352964, OTTHUMP00000161444, ENST00000359895, OTTHUMT00000253425
- Conserved Domains (5) summary
-
- cd00992
Location:5 – 79
Blast Score: 145
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- PRK12270
Location:143 – 220
Blast Score: 89
- kgd; alpha-ketoglutarate decarboxylase; Reviewed
- cd09452
Location:248 – 299
Blast Score: 286
- LIM1_Enigma; The first LIM domain of Enigma
- cd09456
Location:307 – 358
Blast Score: 298
- LIM2_Enigma; The second LIM domain of Enigma
- cd09458
Location:366 – 420
Blast Score: 315
- LIM3_Enigma; The third LIM domain of Enigma
-
NM_213636.1 → NP_998801.1 PDZ and LIM domain protein 7 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and coding region compared to variant 1. The resulting isoform (4) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
BC014521, CB993539
- Consensus CDS
-
CCDS4424.1
- UniProtKB/Swiss-Prot
-
Q9NR12
- Related
- ENSP00000347776, OTTHUMP00000161445, ENST00000355572, OTTHUMT00000253426
- Conserved Domains (1) summary
-
- cd00992
Location:5 – 79
Blast Score: 142
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000005.9 Reference GRCh37.p5 Primary Assembly
- Range
- 176910395..176924602, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000137.1 Alternate HuRef
- Range
- 171830716..171845063, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NM_203353.1: Suppressed sequence
- Description
- NM_203353.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.