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    LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) [ Homo sapiens (human) ]

    Gene ID: 9227, updated on 12-May-2013
    Official Symbol
    LRATprovided by HGNC
    Official Full Name
    lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase)provided by HGNC
    Primary source
    HGNC:6685
    See related
    Ensembl:ENSG00000121207; HPRD:05332; MIM:604863; Vega:OTTHUMG00000161418
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LCA14
    Summary
    The protein encoded by this gene is a microsomal enzyme that catalyzes the esterification of all-trans-retinol into all-trans-retinyl ester, an essential reaction for the retinoid cycle in visual system and vitamin A status in liver. Mutations in this gene have been associated with early-onset severe retinal dystrophy. [provided by RefSeq, Jul 2008]
    Location :
    4q32.1
    Sequence :
    Chromosome: 4; NC_000004.11 (155665163..155674270)
    See LRAT in Epigenomics, MapViewer

    Chromosome 4 - NC_000004.11Genomic Context describing neighboring genes Neighboring gene fibrinogen alpha chain Neighboring gene fibrinogen gamma chain Neighboring gene RNA binding motif protein 46 Neighboring gene neuropeptide Y receptor Y2

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Leber congenital amaurosis 14

    Summary from GeneReviews: Leber Congenital Amaurosis Go to GeneReviews

    Disease Characteristics
    Leber congenital amaurosis (LCA), a severe dystrophy of the retina, typically becomes evident in the first year of life. Visual function is usually poor and often accompanied by nystagmus, sluggish or near-absent pupillary responses, photophobia, high hyperopia, and keratoconus. Visual acuity is rarely better than 20/400. A characteristic finding is Franceschetti's oculo-digital sign, comprising eye poking, pressing, and rubbing. The appearance of the fundus is extremely variable. While the retina may initially appear normal, a pigmentary retinopathy reminiscent of retinitis pigmentosa is frequently observed later in childhood. The electroretinogram (ERG) is characteristically "nondetectable" or severely subnormal.
    Diagnosis Testing
    The diagnosis of LCA is established by clinical findings. Molecular genetic testing is clinically available for the 17genes in which mutations are known to cause LCA: GUCY2D (locus name: LCA1), RPE65 (LCA2), SPATA7 (LCA3), AIPL1 (LCA4), LCA5 (LCA5), RPGRIP1 (LCA6), CRX (LCA7), CRB1 (LCA8), NMNAT1 (LCA9), CEP290 (LCA10), IMPDH1 (LCA11), RD3 (LCA12), RDH12 (LCA13), LRAT (LCA14), TULP1 (LCA15), KCNJ13 (LCA16), and IQCB1. Together, mutations in these genes are estimated to account for over half of all LCA diagnoses. At least one other disease locus for LCA has been reported, but the gene is not known.
    Genetic Counseling
    Most often LCA is inherited in an autosomal recessive manner. At conception, each sib of an individual with recessively inherited LCA has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Carrier testing for at-risk family members and prenatal testing for pregnancies at increased risk may be possible if the disease-causing mutations in the family are known. Rarely, LCA is inherited in an autosomal dominant manner as a result of mutations within CRX; the possibility of autosomal dominant inheritance resulting from a de novo CRX mutation should be considered in individuals with LCA and no family history of the disease.
    References

    Retinitis pigmentosa

    Summary from GeneReviews: Retinitis Pigmentosa Overview Go to GeneReviews

    Disease Characteristics
    Retinitis pigmentosa (RP) is a group of inherited disorders in which abnormalities of the photoreceptors (rods and cones) or the retinal pigment epithelium (RPE) of the retina lead to progressive visual loss. Affected individuals first experience defective dark adaptation or "night blindness," followed by constriction of peripheral visual fields and, eventually, loss of central vision late in the course of the disease.
    Diagnosis Testing
    The diagnosis of RP relies on documentation of progressive loss in photoreceptor function by electroretinography (ERG) and visual field testing. Mutations in more than 50 different genes or loci are known to cause nonsyndromic RP. Molecular genetic testing is available on a clinical basis for many RP- related genes. For all other genes, molecular genetic testing is available on a research basis only.
    Genetic Counseling
    The mode of inheritance of RP is determined by family history and, in some instances, by molecular genetic testing. RP can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Females with an X-linked RP mutation may be unaffected or may show clinical symptoms. Such affected females are usually (but not always) less severely affected than males of the same age. Some digenic and mitochondrial forms have also been described. Genetic counseling depends on an accurate diagnosis, determination of the mode of inheritance in each family, and results of molecular genetic testing.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    O95237 O95237 LRAT    HPRD  PubMed  
    O95237 P09455 RBP1    HPRD  PubMed  
    O95237 P50120 RBP2    HPRD  PubMed  
    BioGRID:114658 BioGRID:114658 LRAT    BioGRID  PubMed Reconstituted Complex 

    Markers

    Homology

    Clone Names

    • MGC33103

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    phosphatidylcholine-retinol O-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    retinoic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    retinol binding IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring acyl groups TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    embryo development IEA
    Inferred from Electronic Annotation
    more info
     
    phototransduction, visible light TAS
    Traceable Author Statement
    more info
     
    retinoic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    retinoid metabolic process TAS
    Traceable Author Statement
    more info
     
    retinol metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    vitamin A metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    endoplasmic reticulum membrane TAS
    Traceable Author Statement
    more info
     
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    multivesicular body ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    perinuclear region of cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    rough endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Preferred Names
    lecithin retinol acyltransferase
    Names
    lecithin retinol acyltransferase
    NP_004735.2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009110.1 RefSeqGene

      Range
      5001..14108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_004744.3NP_004735.2  lecithin retinol acyltransferase precursor

      Status: REVIEWED

      Source sequence(s)
      AY546086
      Consensus CDS
      CCDS3789.1
      UniProtKB/Swiss-Prot
      O95237
      Related
      ENSP00000337224, OTTHUMP00000220355, ENST00000336356, OTTHUMT00000365246
      Conserved Domains (1) summary
      pfam04970
      Location:38173
      Blast Score: 436
      LRAT; Lecithin retinol acyltransferase

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000004.11 Reference GRCh37.p10 Primary Assembly

      Range
      155665163..155674270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000136.1 Alternate HuRef

      Range
      151405746..151414958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018915.1 Alternate CHM1_1.0

      Range
      155457724..155466830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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