These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001083585.1 → NP_001077054.1 rab GTPase-binding effector protein 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The resulting protein (isoform 2) is shorter than isoform 1.
- Source sequence(s)
-
AA873800, AF098638, AL157499, BC041700, DB169027, X91141
- Consensus CDS
-
CCDS42243.1
- UniProtKB/Swiss-Prot
-
Q15276
- Related
- ENSP00000339569, ENST00000341923
- Conserved Domains (3) summary
-
- pfam09311
Location:612 – 774
Blast Score: 239
- Rab5-bind; Rabaptin-like protein
- pfam03528
Location:89 – 195
Blast Score: 255
- Rabaptin; Rabaptin
- TIGR02168
Location:14 – 309
Blast Score: 122
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
-
NM_004703.4 → NP_004694.2 rab GTPase-binding effector protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AA873800, AL157499, BC041700, BX103338, DB169027, X91141
- Consensus CDS
-
CCDS45592.1
- UniProtKB/Swiss-Prot
-
Q15276
- Related
- ENSP00000437701, ENST00000546142
- Conserved Domains (3) summary
-
- pfam09311
Location:612 – 807
Blast Score: 285
- Rab5-bind; Rabaptin-like protein
- pfam03528
Location:89 – 195
Blast Score: 250
- Rabaptin; Rabaptin
- TIGR02168
Location:14 – 309
Blast Score: 119
- SMC_prok_B; chromosome segregation protein SMC, common bacterial type
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000017.10 Reference GRCh37.p5 Primary Assembly
- Range
- 5185558..5289132
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000149.1 Alternate HuRef
- Range
- 5076120..5179776
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)