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    KCNQ4 potassium voltage-gated channel, KQT-like subfamily, member 4 [ Homo sapiens (human) ]

    Gene ID: 9132, updated on 5-May-2013
    Official Symbol
    KCNQ4provided by HGNC
    Official Full Name
    potassium voltage-gated channel, KQT-like subfamily, member 4provided by HGNC
    Primary source
    HGNC:6298
    See related
    Ensembl:ENSG00000117013; HPRD:04641; MIM:603537; Vega:OTTHUMG00000007730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DFNA2; KV7.4; DFNA2A
    Summary
    The protein encoded by this gene forms a potassium channel that is thought to play a critical role in the regulation of neuronal excitability, particularly in sensory cells of the cochlea. The current generated by this channel is inhibited by M1 muscarinic acetylcholine receptors and activated by retigabine, a novel anti-convulsant drug. The encoded protein can form a homomultimeric potassium channel or possibly a heteromultimeric channel in association with the protein encoded by the KCNQ3 gene. Defects in this gene are a cause of nonsyndromic sensorineural deafness type 2 (DFNA2), an autosomal dominant form of progressive hearing loss. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
    Location :
    1p34
    Sequence :
    Chromosome: 1; NC_000001.10 (41249684..41306124)
    See KCNQ4 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y, gamma Neighboring gene microRNA 30c-1 Neighboring gene microRNA 30e Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 Neighboring gene protein phosphatase 2, catalytic subunit, alpha isozyme pseudogene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    DFNA 2 Nonsyndromic Hearing Loss

    Summary from GeneReviews: DFNA2 Nonsyndromic Hearing Loss Go to GeneReviews

    Disease Characteristics
    DFNA2 nonsyndromic hearing loss is characterized by symmetric, predominantly high-frequency sensorineural hearing loss (SNHL) that is progressive across all frequencies. At younger ages, hearing loss tends to be mild in the low frequencies and moderate in the high frequencies; in older persons, the hearing loss is moderate in the low frequencies and severe to profound in the high frequencies. Although the hearing impairment is often detected during routine hearing assessment of a school-age child, it is likely that hearing is impaired from birth, especially at high frequencies. Most affected persons initially require hearing aids to assist with sound amplification between ages ten and 40 years. By age 70 years, all persons with DFNA2 hearing loss have severe-to-profound hearing impairment.
    Diagnosis Testing
    The diagnosis of DFNA2 hearing loss is established in an individual with a characteristic audioprofile, a family history consistent with autosomal dominant inheritance, and a deafness-causing mutation in KCNQ4, the only gene known to be associated with DFNA2 hearing loss. Molecular genetic testing is available on a clinical basis.
    Genetic Counseling
    DFNA2 hearing loss is inherited in an autosomal dominant manner. Most individuals with DFNA2 hearing loss have a hearing-impaired parent; the proportion of cases caused by de novo mutations is unknown. Each child of an individual with DFNA2 hearing loss has a 50% chance of inheriting the mutation. Prenatal diagnosis of DFNA2 hearing loss is available on a limited basis and may also be possible through a laboratory offering custom prenatal testing for families in which the deafness-causing mutation is known.
    References

    Summary from GeneReviews: Deafness and Hereditary Hearing Loss Overview Go to GeneReviews

    Disease Characteristics
    Hereditary hearing loss and deafness may be conductive, sensorineural, or a combination of both; syndromic (associated with malformations of the external ear or other organs or with medical problems involving other organ systems) or nonsyndromic (no associated visible abnormalities of the external ear or any related medical problems); and prelingual (before language develops) or postlingual (after language develops).
    Diagnosis Testing
    Genetic forms of hearing loss must be distinguished from acquired (non-genetic) causes of hearing loss. The genetic forms of hearing loss are diagnosed by otologic, audiologic, and physical examination, family history, ancillary testing (e.g., CT examination of the temporal bone), and molecular genetic testing. Molecular genetic testing, available in clinical laboratories for many types of syndromic and nonsyndromic deafness, plays a prominent role in diagnosis and genetic counseling.
    Genetic Counseling
    Hereditary hearing loss can be inherited in an autosomal dominant, autosomal recessive, or X-linked recessive manner, as well as by mitochondrial inheritance. Genetic counseling and risk assessment depend on accurate determination of the specific genetic diagnosis. In the absence of a specific diagnosis, empiric recurrence risk figures, coupled with GJB2 and GJB6 molecular genetic testing results, can be used for genetic counseling.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    P56696 O43525 KCNQ3    HPRD  PubMed  
    BioGRID:114580 BioGRID:109534 DNAJA1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114580 BioGRID:109552 HSP90AA1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114580 BioGRID:113036 HSP90B1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114580 BioGRID:109544 HSPA8    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114580 BioGRID:116162 STIP1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114580 BioGRID:115563 STUB1    BioGRID  PubMed Affinity Capture-Western 
    • Cholinergic synapse, organism-specific biosystem (from KEGG)
      Cholinergic synapse, organism-specific biosystemAcetylcholine (ACh) is a neurotransmitter widely distributed in the central (and also peripheral, autonomic and enteric) nervous system (CNS). In the CNS, ACh facilitates many functions, such as lear...
    • Neuronal System, organism-specific biosystem (from REACTOME)
      Neuronal System, organism-specific biosystemThe human brain contains at least 100 billion neurons, each with the ability to influence many other cells. Clearly, highly sophisticated and efficient mechanisms are needed to enable communication a...
    • Potassium Channels, organism-specific biosystem (from REACTOME)
      Potassium Channels, organism-specific biosystemPotassium channels are tetrameric ion channels that are widely distributed and are found in all cell types. Potassium channels control resting membrane potential in neurons, contribute to regulation ...
    • Voltage gated Potassium channels, organism-specific biosystem (from REACTOME)
      Voltage gated Potassium channels, organism-specific biosystemVoltage-gated K+ channels (Kv) determine the excitability of heart, brain and skeletal muscle cells. Kv form octameric channel with alpha subunits that forms the pore of the channel and associated be...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    delayed rectifier potassium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    potassium channel activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    inner ear morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    potassium ion transport TAS
    Traceable Author Statement
    more info
    PubMed 
    sensory perception of sound IEA
    Inferred from Electronic Annotation
    more info
     
    synaptic transmission TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    basal plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
     
    voltage-gated potassium channel complex IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    potassium voltage-gated channel subfamily KQT member 4
    Names
    potassium voltage-gated channel subfamily KQT member 4
    potassium channel KQT-like 4
    potassium channel subunit alpha KvLQT4

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008139.1 RefSeqGene

      Range
      5001..61441
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_004700.3NP_004691.2  potassium voltage-gated channel subfamily KQT member 4 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer and predominant isoform (a).
      Source sequence(s)
      AC119677, AF105202, AK074957, CA411644, DA782056
      Consensus CDS
      CCDS456.1
      UniProtKB/TrEMBL
      B3KQH8
      UniProtKB/Swiss-Prot
      P56696
      Related
      ENSP00000262916, OTTHUMP00000009219, ENST00000347132, OTTHUMT00000020812
      Conserved Domains (3) summary
      pfam00520
      Location:134318
      Blast Score: 230
      Ion_trans; Ion transport protein
      pfam03520
      Location:462658
      Blast Score: 683
      KCNQ_channel; KCNQ voltage-gated potassium channel
      pfam07885
      Location:246319
      Blast Score: 188
      Ion_trans_2; Ion channel
    2. NM_172163.2NP_751895.1  potassium voltage-gated channel subfamily KQT member 4 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a. There are no publicly available transcripts supporting this variant; it is represented based on data in PMID:10025409.
      Source sequence(s)
      AC119677, AF105202, AK074957, CA411644, DA782056
      UniProtKB/TrEMBL
      B3KQH8
      UniProtKB/Swiss-Prot
      P56696
      Conserved Domains (3) summary
      pfam00520
      Location:134318
      Blast Score: 224
      Ion_trans; Ion transport protein
      pfam03520
      Location:408604
      Blast Score: 684
      KCNQ_channel; KCNQ voltage-gated potassium channel
      pfam07885
      Location:246319
      Blast Score: 185
      Ion_trans_2; Ion channel

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      41249684..41306124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      39389941..39423633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1

      Range
      41327962..41382271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003960106.1XP_003960155.1  

      Conserved Domains (3) summary
      pfam00520
      Location:87271
      Blast Score: 228
      Ion_trans; Ion transport protein
      pfam03520
      Location:415611
      Blast Score: 681
      KCNQ_channel; KCNQ voltage-gated potassium channel
      pfam07885
      Location:199272
      Blast Score: 188
      Ion_trans_2; Ion channel

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