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    BC1002_2299 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [ Burkholderia sp. CCGE1002 ]

    Gene ID: 9090006, updated on 10-Jun-2013
    Gene symbol
    BC1002_2299
    Gene description
    RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
    Locus tag
    BC1002_2299
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Burkholderia sp. CCGE1002 (strain: CCGE1002)
    Lineage
    Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia
    Location :
    chromosome: 1
    Sequence :
    Chromosome: 1; NC_014117.1 (2572927..2573589)

    Chromosome 1 - NC_014117.1Genomic Context describing neighboring genes Neighboring gene guanylate kinase Neighboring gene YicC domain-containing protein Neighboring gene ribonuclease PH Neighboring gene oxygen-independent coproporphyrinogen III oxidase Neighboring gene tRNA Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Genome sequences of Burkholderia sp. strains CCGE1002 and H160, isolated from legume nodules in Mexico and Brazil. Ormeño-Orrillo E, et al. J Bacteriol, 2012 Dec. PMID 23209196.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
    YP_003605869.1
    • KEGG: bpy:Bphyt_3088 deoxyribonucleotide triphosphate pyrophosphatase~TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family~PFAM: Ham1 family protein

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_014117.1

      Range
      2572927..2573589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_003605869.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase [Burkholderia sp. CCGE1002]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      D5WB53
      Conserved Domains (1) summary
      cd00515
      Location:25 – 204
      Blast Score: 571
      HAM1; NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A ...
    Nucleotide Protein
    Heading Accession and Version
    genomic CP002013.1 ADG16358.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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