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ZNF625 zinc finger protein 625 [ Homo sapiens (human) ]

Gene ID: 90589, updated on 7-Dec-2014
Official Symbol
ZNF625provided by HGNC
Official Full Name
zinc finger protein 625provided by HGNC
Primary source
HGNC:HGNC:30571
See related
HPRD:15880
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
See ZNF625 in Epigenomics, MapViewer
Location:
19p13.2
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 19 NC_000019.10 (12144890..12156731, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (12255705..12267546, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ZNF625-ZNF20 readthrough (NMD candidate) Neighboring gene zinc finger protein 20 Neighboring gene ribosomal protein L17 pseudogene 47 Neighboring gene zinc finger protein 136 Neighboring gene uncharacterized LOC100289333 Neighboring gene uncharacterized LOC101928574

  • Gene Expression, organism-specific biosystem (from REACTOME)
    Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
  • Generic Transcription Pathway, organism-specific biosystem (from REACTOME)
    Generic Transcription Pathway, organism-specific biosystemOVERVIEW OF TRANSCRIPTION REGULATION: Detailed studies of gene transcription regulation in a wide variety of eukaryotic systems has revealed the general principles and mechanisms by which cell- or t...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Readthrough ZNF625-ZNF20

Readthrough gene: ZNF625-ZNF20, Included gene: ZNF20

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
zinc finger protein 625
Names
zinc finger protein 625

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145233.3NP_660276.2  zinc finger protein 625

    See proteins identical to NP_660276.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the supported protein.
    Source sequence(s)
    AC022415, BC007868, DB071985, DN991057
    Consensus CDS
    CCDS12269.2
    UniProtKB/Swiss-Prot
    Q96I27
    Conserved Domains (3) summary
    cd07765
    Location:642
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:170350
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:233258
    zf-H2C2_2; Zinc-finger double domain

RNA

  1. NR_037801.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC022415, BC007868, DB071985

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000019.10 

    Range
    12144890..12156731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018930.2 

    Range
    12255515..12267359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000151.1 

    Range
    11830762..11842604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)