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    TM1574 tRNA pseudouridine synthase ACD [ Thermotoga maritima MSB8 ]

    Gene ID: 897640, updated on 15-May-2013
    Gene symbol
    TM1574
    Gene description
    tRNA pseudouridine synthase ACD
    Locus tag
    TM1574
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Thermotoga maritima MSB8 (strain: MSB8)
    Lineage
    Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga
    Sequence :
    NC_000853.1 (1561774..1562511)

    NC_000853.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L19 Neighboring gene signal peptidase I Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hemolysin Neighboring gene hypothetical protein

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nelson KE, et al. Nature, 1999 May 27. PMID 10360571.

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Names
    tRNA pseudouridine synthase ACD
    NP_229374.1
    • mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000853.1

      Range
      1561774..1562511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_229374.1 tRNA pseudouridine synthase ACD [Thermotoga maritima MSB8]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      G4FFW2
      UniProtKB/Swiss-Prot
      Q9X1R0
      Conserved Domains (2) summary
      PRK14586
      Location:1 – 245
      Blast Score: 1260
      PRK14586; tRNA pseudouridine synthase ACD; Provisional
      cd02570
      Location:6 – 245
      Blast Score: 891
      PseudoU_synth_EcTruA; Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA
    Nucleotide Protein
    Heading Accession and Version
    genomic AE000512.1 AAD36641.1
    genomic AGIJ01000002.1 EHA59671.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9X1R0.1 GenPept

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases

      Supplemental Content

      Table of contents

      Related information

      • BioProjects
        BioProjects related to a gene
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • Nucleotide
        Link to related Nucleotide entry
      • Protein
        Link to related protein entry
      • Protein Clusters
        Related Protein Clusters
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • Taxonomy
        Link to related taxonomy entry

      Links to other resources

      General information

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