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    CCND3 cyclin D3 [ Homo sapiens (human) ]

    Gene ID: 896, updated on 14-May-2013
    Official Symbol
    CCND3provided by HGNC
    Official Full Name
    cyclin D3provided by HGNC
    Primary source
    HGNC:1585
    Locus tag
    RP5-973N23.3
    See related
    Ensembl:ENSG00000112576; HPRD:00452; MIM:123834; Vega:OTTHUMG00000014690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    The protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. This cyclin forms a complex with and functions as a regulatory subunit of CDK4 or CDK6, whose activtiy is required for cell cycle G1/S transition. This protein has been shown to interact with and be involved in the phosphorylation of tumor suppressor protein Rb. The CDK4 activity associated with this cyclin was reported to be necessary for cell cycle progression through G2 phase into mitosis after UV radiation. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]
    Location :
    6p21
    Sequence :
    Chromosome: 6; NC_000006.11 (41902671..42016610, complement)
    See CCND3 in Epigenomics, MapViewer

    Chromosome 6 - NC_000006.11Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 20 Neighboring gene bystin-like Neighboring gene TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa Neighboring gene chromosome 6 open reading frame 132

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Protein Gene Interaction Pubs
    Tat, p14 tat When expressed in astrocytes, neurons, and non-glial 293T cells, HIV-1 Tat interacts with a number of cell cycle-related proteins including cyclin A, cyclin B, cyclin D3, Cdk2, Cdk4, Cdk1/Cdc2, cdc6, p27, p53, p63, hdlg, and PCNA PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    P30281 O43823 AKAP8    HPRD  PubMed  
    P30281 P15514 AREG    HPRD  PubMed  
    P30281 Q9Y2D1 ATF5    HPRD  PubMed  
    P30281 P36542 ATP5C1    HPRD  PubMed  
    P30281 P42575 CASP2    HPRD  PubMed  
    P30281 P21127 CDK11B    HPRD  PubMed  
    P30281 O94921 CDK14    HPRD  PubMed  
    P30281 P11802 CDK4    HPRD  PubMed  
    P30281 Q00534 CDK6    HPRD  PubMed  
    P30281 P38936 CDKN1A    HPRD  PubMed  
    P30281 P46527 CDKN1B    HPRD  PubMed  
    P30281 P29373 CRABP2    HPRD  PubMed  
    P30281 Cyclin D binding myb like transcription factor 1 DMTF1    HPRD  PubMed  
    P30281 Q96EV8 DTNBP1    HPRD  PubMed  
    P30281 O95967 EFEMP2    HPRD  PubMed  
    P30281 Q9UBQ5 EIF3K    HPRD  PubMed  
    P30281 Q9H063 MAF1    HPRD  PubMed  
    P30281 P31152 MAPK4    HPRD  PubMed  
    P30281 Q7L590 MCM10    HPRD  PubMed  
    P30281 Q15596 NCOA2    HPRD  PubMed  
    P30281 Q9NQX5 NPDC1    HPRD  PubMed  
    P30281 P12004 PCNA    HPRD  PubMed  
    P30281 P10276 RARA    HPRD  PubMed  
    P30281 Q08999 RBL2    HPRD  PubMed  
    P30281 Q01196 RUNX1    HPRD  PubMed  
    P30281 P11473 VDR    HPRD  PubMed  
    BioGRID:107336 BioGRID:115561 AKAP8    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:107336 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:107336 BioGRID:116487 ATF5    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:106997 ATP5C1    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:107285 CASP2    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:107421 CDK11B    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:107336 BioGRID:111239 CDK14    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:107336 BioGRID:107452 CDK2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107336 BioGRID:107454 CDK4    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:107336 BioGRID:107456 CDK6    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107336 BioGRID:107460 CDKN1A    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:107336 BioGRID:107461 CDKN1B    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:107336 BioGRID:107773 CRABP2    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:107336 BioGRID:123857 DTNBP1    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:119026 EFEMP2    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:118148 EIF3K    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:107336 BioGRID:108416 ETV1    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:106851 FAS    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:108908 GC    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:123965 MAF1    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:111583 MAPK6    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:120654 MCM10    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:107336 BioGRID:110687 MYB    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:115761 NCOA2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:107336 BioGRID:110894 NME1    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:121167 NPDC1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:107336 BioGRID:111142 PCNA    BioGRID  PubMed Reconstituted Complex 
    BioGRID:107336 BioGRID:111420 POLD1    BioGRID  PubMed Biochemical Activity 
    BioGRID:107336 BioGRID:111493 PPP1CA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107336 BioGRID:111494 PPP1CB    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107336 BioGRID:111495 PPP1CC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107336 BioGRID:111849 RARA    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:107336 BioGRID:111860 RB1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:107336 BioGRID:111869 RBL2    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:115301 RBX1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107336 BioGRID:122145 SIL1    BioGRID  PubMed Two-hybrid 
    BioGRID:107336 BioGRID:113100 TSC2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107336 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:107336 BioGRID:113264 VDR    BioGRID  PubMed Two-hybrid 
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      G1 to S cell cycle control, organism-specific biosystemIn the G1 phase there are two types of DNA damage responses, the p53-dependent and the p53-independent pathways. The p53-dependent responses inhibit CDKs through the up-regulation of genes encoding C...
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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    cyclin-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    T cell proliferation IEA
    Inferred from Electronic Annotation
    more info
     
    cell division IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of cyclin-dependent protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of protein phosphorylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cyclin-dependent protein kinase holoenzyme complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    G1/S-specific cyclin-D3
    Names
    G1/S-specific cyclin-D3
    D3-type cyclin
    G1/S-specific cyclin D3

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001136017.2NP_001129489.1  G1/S-specific cyclin-D3 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR and coding sequence compared to variant 2. The resulting isoform (1) is shorter at the N-terminus compared to isoform 2.
      Source sequence(s)
      AK057206, AL160163, BC011616, DB001987
      Consensus CDS
      CCDS47426.1
      UniProtKB/Swiss-Prot
      P30281
      Related
      ENSP00000362079, OTTHUMP00000223408, ENST00000372988, OTTHUMT00000372249
      Conserved Domains (2) summary
      cd00043
      Location:164
      Blast Score: 101
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
      pfam02984
      Location:74179
      Blast Score: 157
      Cyclin_C; Cyclin, C-terminal domain
    2. NM_001136125.1NP_001129597.1  G1/S-specific cyclin-D3 isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon compared to variant 2. The resulting isoform (3) has the same N- and C-termini but is shorter compared to isoform 2.
      Source sequence(s)
      AK057206, AL160163, BC011616, DC360231, M92287
      Consensus CDS
      CCDS47425.1
      UniProtKB/Swiss-Prot
      P30281
      Related
      ENSP00000397545, OTTHUMP00000223406, ENST00000414200, OTTHUMT00000372246
      Conserved Domains (2) summary
      pfam02984
      Location:83188
      Blast Score: 160
      Cyclin_C; Cyclin, C-terminal domain
      cl00050
      Location:2666
      Blast Score: 88
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    3. NM_001136126.1NP_001129598.1  G1/S-specific cyclin-D3 isoform 4

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 2. The resulting isoform (4) is shorter at the N-terminus compared to isoform 2.
      Source sequence(s)
      AK057206, AL160163, BC011616, DA069566, DB001987
      Consensus CDS
      CCDS47427.1
      UniProtKB/Swiss-Prot
      P30281
      Related
      ENSP00000401595, OTTHUMP00000223409, ENST00000415497, OTTHUMT00000372250
      Conserved Domains (1) summary
      pfam02984
      Location:164
      Blast Score: 112
      Cyclin_C; Cyclin, C-terminal domain
    4. NM_001760.3NP_001751.1  G1/S-specific cyclin-D3 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) encodes the largest isoform (2).
      Source sequence(s)
      AK057206, AL160163, BC011616, M92287
      Consensus CDS
      CCDS4863.1
      UniProtKB/Swiss-Prot
      P30281
      Related
      ENSP00000362082, OTTHUMP00000016390, ENST00000372991, OTTHUMT00000040540
      Conserved Domains (2) summary
      cd00043
      Location:56145
      Blast Score: 118
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
      pfam02984
      Location:155260
      Blast Score: 157
      Cyclin_C; Cyclin, C-terminal domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000006.11 Reference GRCh37.p10 Primary Assembly

      Range
      41902671..42016610, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000138.1 Alternate HuRef

      Range
      41621515..41734566, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018917.1 Alternate CHM1_1.0

      Range
      41813223..41927013, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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