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    EIF2B3 eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa [ Homo sapiens (human) ]

    Gene ID: 8891, updated on 15-Jun-2013
    Official Symbol
    EIF2B3provided by HGNC
    Official Full Name
    eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDaprovided by HGNC
    Primary source
    HGNC:3259
    Locus tag
    RP5-882O7.2
    See related
    Ensembl:ENSG00000070785; HPRD:09379; MIM:606273; Vega:OTTHUMG00000008585
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    EIF-2B; EIF2Bgamma
    Summary
    The protein encoded by this gene is one of the subunits of initiation factor eIF2B, which catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP. It has also been found to function as a cofactor of hepatitis C virus internal ribosome entry site-mediated translation. Mutations in this gene have been associated with leukodystrophy with vanishing white matter. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2009]
    Location :
    1p34.1
    Sequence :
    Chromosome: 1; NC_000001.10 (45316194..45452394, complement)
    See EIF2B3 in Epigenomics, MapViewer

    Chromosome 1 - NC_000001.10Genomic Context describing neighboring genes Neighboring gene BTB (POZ) domain containing 19 Neighboring gene RNA, U5E small nuclear 6, pseudogene Neighboring gene patched 2 Neighboring gene cyclin B1 interacting protein 1 pseudogene 1 Neighboring gene peptidylprolyl isomerase A (cyclophilin A) pseudogene Neighboring gene mitochondrial ribosomal protein S17 pseudogene 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Leukoencephalopathy with vanishing white matter

    Summary from GeneReviews: Childhood Ataxia with Central Nervous System Hypomelination/Vanishing White Matter Go to GeneReviews

    Disease Characteristics
    Childhood ataxia with central nervous system hypomyelination/vanishing white matter disease (CACH/VWM) is characterized by ataxia, spasticity, and variable optic atrophy. The phenotypic range includes a prenatal/congenital form, a subacute infantile form (onset age <1 year), an early childhood onset form (onset age 1-5 years), a late childhood /juvenile onset form (onset age 5-15 years), and an adult onset form. The prenatal/congenital form is characterized by severe encephalopathy. In the later onset forms initial motor and intellectual development is normal or mildly delayed followed by neurologic deterioration with a chronic progressive or subacute course. Chronic progressive decline can be exacerbated by rapid deterioration during febrile illnesses or following head trauma or major surgical procedures, or by acute psychological stresses such as extreme fright.
    Diagnosis Testing
    The diagnosis of CACH/VWM can be made with confidence in individuals with typical clinical findings, characteristic abnormalities on cranial MRI, and identifiable mutations in one of five genes (EIF2B1, EIF2B2, EIF2B3, EIF2B4, EIF2B5), encoding the five subunits of the eukaryotic translation initiation factor 2B (eIF2B). Mutations have been found in approximately 90% of individuals with CACH/VWM using sequence analysis or mutation scanning.
    Genetic Counseling
    CACH/VWM is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the chance of his/her being a carrier is 2/3. Prenatal diagnosis for pregnancies at increased risk is possible if the disease-causing mutations in an affected relative have been identified.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q9NR50 Q9NR50 EIF2B3    HPRD  PubMed  
    Q9NR50 P05198 EIF2S1    HPRD  PubMed  
    Q9NR50 P20042 EIF2S2    HPRD  PubMed  
    Q9NR50 Q8NBJ4 GOLM1    HPRD  PubMed  
    Q9NR50 O95169 NDUFB8    HPRD  PubMed  
    Q9NR50 O76061 STC2    HPRD  PubMed  
    BioGRID:114408 BioGRID:106541 ABCF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:119650 C14orf166    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:108019 DDX1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:108025 DHX9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:118116 DIMT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:117171 EDC4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:108286 EIF2B1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:114409 EIF2B2    BioGRID  PubMed Affinity Capture-MS; Co-fractionation 
    BioGRID:114408 BioGRID:114407 EIF2B4    BioGRID  PubMed Co-fractionation 
    BioGRID:114408 BioGRID:114410 EIF2B5    BioGRID  PubMed Co-fractionation; Reconstituted Complex 
    BioGRID:114408 BioGRID:114212 EIF3C    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:108577 FKBP3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:108603 FLII    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:115448 G3BP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:110751 HNRNPM    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:109433 HNRNPU    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:115887 IGF2BP3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:109821 ILF2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:110501 MRE11A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:110794 NDUFB8    BioGRID  PubMed Two-hybrid 
    BioGRID:114408 BioGRID:117421 NELFB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:110899 NMT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:111797 QARS    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:111916 RFC4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:119569 RTCB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:114172 STC2    BioGRID  PubMed Two-hybrid 
    BioGRID:114408 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114408 BioGRID:114101 YBX3    BioGRID  PubMed Affinity Capture-MS 
    • Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
      Cap-dependent Translation Initiation, organism-specific biosystemTranslation initiation is a complex process in which the Met-tRNAi initiator, 40S, and 60S ribosomal subunits are assembled by eukaryotic initiation factors (eIFs) into an 80S ribosome at the start c...
    • Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
      Eukaryotic Translation Initiation, organism-specific biosystemInitiation of translation in the majority of eukaryotic cellular mRNAs depends on the 5'-cap (m7GpppN) and involves ribosomal scanning of the 5' untranslated region (5'-UTR) for an initiating AUG sta...
    • Gene Expression, organism-specific biosystem (from REACTOME)
      Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
    • Metabolism of proteins, organism-specific biosystem (from REACTOME)
      Metabolism of proteins, organism-specific biosystemProtein metabolism comprises the pathways of translation, post-translational modification and protein folding.
    • RNA transport, organism-specific biosystem (from KEGG)
      RNA transport, organism-specific biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • RNA transport, conserved biosystem (from KEGG)
      RNA transport, conserved biosystemRNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) ...
    • Recycling of eIF2:GDP, organism-specific biosystem (from REACTOME)
      Recycling of eIF2:GDP, organism-specific biosystemThe active eIF2:GTP complex may be formed by direct binding of GTP to free eIF2 or by GDP-GTP exchange on the eIF2:GDP:eIF2B complex. The eIF2:GDP complex binds eIF2B forming an eIF2:GDP:eIF2B interm...
    • Translation, organism-specific biosystem (from REACTOME)
      Translation, organism-specific biosystemProtein synthesis is accomplished through the process of translation of an mRNA sequence into a polypeptide chain. This process can be divided into three distinct stages: initiation, elongation and ...
    • Translation Factors, organism-specific biosystem (from WikiPathways)
      Translation Factors, organism-specific biosystemProtein synthesis is the ultimate step of gene expression and a key control point for regulation. In particular, it enables cells to rapidly manipulate protein production without new mRNA synthesis, ...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    cellular protein metabolic process TAS
    Traceable Author Statement
    more info
     
    cellular response to stimulus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    gene expression TAS
    Traceable Author Statement
    more info
     
    negative regulation of translational initiation in response to stress ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    oligodendrocyte development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to glucose stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    response to heat ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    response to heat TAS
    Traceable Author Statement
    more info
    PubMed 
    response to peptide hormone stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    translation TAS
    Traceable Author Statement
    more info
     
    translational initiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    translational initiation TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol TAS
    Traceable Author Statement
    more info
     
    eukaryotic translation initiation factor 2B complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    translation initiation factor eIF-2B subunit gamma
    Names
    translation initiation factor eIF-2B subunit gamma
    eIF-2B GDP-GTP exchange factor subunit gamma

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_015864.1 RefSeqGene

      Range
      4968..141168
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001166588.2NP_001160060.1  translation initiation factor eIF-2B subunit gamma isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 3' end compared to variant 1, and encodes a shorter isoform (2) with a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK024006, AL834288, AW972575, DA141801, DA162797
      Consensus CDS
      CCDS53313.1
      UniProtKB/Swiss-Prot
      Q9NR50
      Related
      ENSP00000361257, OTTHUMP00000010263, ENST00000372183, OTTHUMT00000023725
      Conserved Domains (3) summary
      COG1208
      Location:4401
      Blast Score: 291
      GCD1; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure ...
      cd04198
      Location:3212
      Blast Score: 764
      eIF-2B_gamma_N; The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2.
      cl00160
      Location:357401
      Blast Score: 201
      LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
    2. NM_001261418.1NP_001248347.1  translation initiation factor eIF-2B subunit gamma isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks the penultimate exon compared to variant 1. The resulting protein (isoform 3) is shorter compared to isoform 1.
      Source sequence(s)
      AL136380, BC018728
      UniProtKB/Swiss-Prot
      Q9NR50
      Conserved Domains (3) summary
      COG1208
      Location:4401
      Blast Score: 288
      GCD1; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure ...
      cd04198
      Location:3212
      Blast Score: 763
      eIF-2B_gamma_N; The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2.
      cl00160
      Location:357401
      Blast Score: 201
      LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
    3. NM_020365.4NP_065098.1  translation initiation factor eIF-2B subunit gamma isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK022399, AK024006, AL136380, BC018728, BF879213, DA162797, W21485
      Consensus CDS
      CCDS517.1
      UniProtKB/TrEMBL
      Q9HA31
      UniProtKB/Swiss-Prot
      Q9NR50
      Related
      ENSP00000353575, OTTHUMP00000010262, ENST00000360403, OTTHUMT00000023724
      Conserved Domains (3) summary
      COG1208
      Location:4447
      Blast Score: 351
      GCD1; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure ...
      cd04652
      Location:357437
      Blast Score: 325
      LbH_eIF2B_gamma_C; eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is ...
      cd04198
      Location:3212
      Blast Score: 765
      eIF-2B_gamma_N; The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2.

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000001.10 Reference GRCh37.p10 Primary Assembly

      Range
      45316194..45452394, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000133.1 Alternate HuRef

      Range
      43428607..43564682, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018912.1 Alternate CHM1_1.0

      Range
      45394081..45530174, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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