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RAB11A RAB11A, member RAS oncogene family [ Homo sapiens (human) ]

Gene ID: 8766, updated on 22-Nov-2014
Official Symbol
RAB11Aprovided by HGNC
Official Full Name
RAB11A, member RAS oncogene familyprovided by HGNC
Primary source
HGNC:HGNC:9760
See related
Ensembl:ENSG00000103769; HPRD:05715; MIM:605570; Vega:OTTHUMG00000133162
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
YL8
Summary
The protein encoded by this gene belongs to the Rab family of the small GTPase superfamily. It is associated with both constitutive and regulated secretory pathways, and may be involved in protein transport. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]
See RAB11A in Epigenomics, MapViewer
Location:
15q22.31
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 15 NC_000015.10 (65869459..65891991)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (66161629..66184329)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 44 Neighboring gene transfer RNA-Gln (CTG) 1-1 Neighboring gene multiple EGF-like-domains 11 Neighboring gene microRNA 4311 Neighboring gene DIS3 like exosome 3'-5' exoribonuclease

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Replication interactions

Interaction Pubs
Knockdown of RAB11A, member RAS oncogene family (RAB11A) by shRNA library screening inhibits HIV-1 replication in cultured Jurkat T-cells PubMed
Knockdown of RAB11A, member RAS oncogene family (RAB11A) by siRNA inhibits HIV-1 replication in CD4+/CCR5+/CXCR4+ TZM-bl HeLa cells PubMed

Protein interactions

Protein Gene Interaction Pubs
Nef nef HIV-1 Nef co-localization with Rab11A GTPase is revealed by staining in the peripheral and perinuclear compartments PubMed
nef RAB11(Q67L) mutant induces significant reversal of HLA-I A2 downregulation by HIV-1 Nef through redistributing HLA-I A2 from the perinuclear vesicles to the peripheral punctate vesicles at the plasma membrane PubMed
Pr55(Gag) gag HIV-1 Gag and viral RNA preferentially co-localize with multivesicular bodies and Rab11a endosomes PubMed
gag Rab11a modulates intracellular Gag expression in U1 cells PubMed

Go to the HIV-1, Human Interaction Database

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC1490

Gene Ontology Provided by GOA

Function Evidence Code Pubs
GTP binding IEA
Inferred from Electronic Annotation
more info
 
GTPase activity IDA
Inferred from Direct Assay
more info
PubMed 
myosin V binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
syntaxin binding NAS
Non-traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
GTP catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
cytokinesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
establishment of protein localization to membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
exosomal secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
melanosome transport ISS
Inferred from Sequence or Structural Similarity
more info
 
multivesicular body assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuron projection development IMP
Inferred from Mutant Phenotype
more info
PubMed 
plasma membrane to endosome transport NAS
Non-traceable Author Statement
more info
PubMed 
positive regulation of axon extension IEA
Inferred from Electronic Annotation
more info
 
positive regulation of epithelial cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein localization to plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of long-term neuronal synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 
regulation of multivesicular body size IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of vesicle-mediated transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
small GTPase mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 
transmembrane transport TAS
Traceable Author Statement
more info
 
vesicle-mediated transport IDA
Inferred from Direct Assay
more info
PubMed 
water transport TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
axon IEA
Inferred from Electronic Annotation
more info
 
cleavage furrow IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic vesicle membrane TAS
Traceable Author Statement
more info
 
extracellular vesicular exosome IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion IEA
Inferred from Electronic Annotation
more info
 
multivesicular body IDA
Inferred from Direct Assay
more info
PubMed 
perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 
phagocytic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
protein complex IDA
Inferred from Direct Assay
more info
PubMed 
recycling endosome ISS
Inferred from Sequence or Structural Similarity
more info
 
recycling endosome membrane IEA
Inferred from Electronic Annotation
more info
 
trans-Golgi network IDA
Inferred from Direct Assay
more info
PubMed 
transport vesicle IEA
Inferred from Electronic Annotation
more info
 
vesicle IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
ras-related protein Rab-11A
Names
ras-related protein Rab-11A
rab-11
RAB 11A, member oncogene family

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206836.1NP_001193765.1  ras-related protein Rab-11A isoform 2

    See proteins identical to NP_001193765.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame segment compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform a.
    Source sequence(s)
    AC084854, AK300008, BC013348, BC047114, DC300743
    Consensus CDS
    CCDS58373.1
    UniProtKB/Swiss-Prot
    P62491
    Conserved Domains (1) summary
    cd01868
    Location:9146
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
  2. NM_004663.4NP_004654.1  ras-related protein Rab-11A isoform 1

    See proteins identical to NP_004654.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC084854, BC013348, BC047114, DC300743
    Consensus CDS
    CCDS10212.1
    UniProtKB/TrEMBL
    A0A024R5Z8
    UniProtKB/Swiss-Prot
    P62491
    Related
    ENSP00000261890, OTTHUMP00000164214, ENST00000261890, OTTHUMT00000256864
    Conserved Domains (2) summary
    PLN03110
    Location:5215
    PLN03110; Rab GTPase; Provisional
    cd01868
    Location:9173
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Alternate HuRef

Genomic

  1. AC_000147.1 

    Range
    42986532..43009063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000015.10 

    Range
    65869459..65891991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018926.2 

    Range
    66279669..66302201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)