These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_032029.1 RefSeqGene
- Range
- 5001..51888
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001135553.2 → NP_001129025.1 MAP kinase-interacting serine/threonine-protein kinase 1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an in-frame coding exon compared to variant 1. This results in a shorter isoform (3) missing an internal protein segment compared to isoform 1.
- Source sequence(s)
-
AB000409, BC002755, BG722049, BM665342, DA502363
- Consensus CDS
-
CCDS44134.1
- UniProtKB/Swiss-Prot
-
Q9BUB5
- Related
- ENSP00000361013, OTTHUMP00000009677, ENST00000371945, OTTHUMT00000021900
- Conserved Domains (2) summary
-
- smart00220
Location:53 – 333
Blast Score: 706
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cl09925
Location:55 – 332
Blast Score: 532
- PKc_like; Protein Kinases, catalytic domain
-
NM_003684.5 → NP_003675.2 MAP kinase-interacting serine/threonine-protein kinase 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
BC002755, BG722049, BM665342, DA435648, DC366212
- Consensus CDS
-
CCDS538.1
- UniProtKB/Swiss-Prot
-
Q9BUB5
- Related
- ENSP00000361014, OTTHUMP00000009674, ENST00000371946, OTTHUMT00000021897
- Conserved Domains (2) summary
-
- smart00220
Location:53 – 374
Blast Score: 664
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cl09925
Location:55 – 373
Blast Score: 486
- PKc_like; Protein Kinases, catalytic domain
-
NM_198973.3 → NP_945324.1 MAP kinase-interacting serine/threonine-protein kinase 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks two coding exons, and uses an alternate donor splice site at the 5' non-coding exon compared to variant 1. The second missing exon results in a frame-shift, and a shorter isoform (2) with a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AK290456, BC002755, BG722049, BM665342, DC376088
- Consensus CDS
-
CCDS30705.1
- UniProtKB/TrEMBL
-
A8K341
- UniProtKB/Swiss-Prot
-
Q9BUB5
- Related
- ENSP00000411135, OTTHUMP00000231552, ENST00000428112, OTTHUMT00000387146
- Conserved Domains (2) summary
-
- smart00220
Location:53 – 333
Blast Score: 700
- S_TKc; Serine/Threonine protein kinases, catalytic domain
- cl09925
Location:55 – 332
Blast Score: 527
- PKc_like; Protein Kinases, catalytic domain
RNA
-
NR_024174.2 RNA Sequence
- Description
- Transcript Variant: This variant (4) lacks three non-consecutive exons compared to variant 1. It is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with the translation of the longest ORF; translation of the upstream ORF renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK298839, BC002755, BG722049, BM665342
-
NR_024176.2 RNA Sequence
- Description
- Transcript Variant: This variant (6) contains an additional exon, and lacks two non-consecutive exons compared to variant 1. It is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with the translation of the longest ORF; translation of the upstream ORF renders this transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AB000409, AK096423, BG722049, BM665342, BX538193
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000001.10 Reference GRCh37.p5 Primary Assembly
- Range
- 47023090..47069966, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000133.1 Alternate HuRef
- Range
- 45138610..45185470, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the cited
reason(s). Suppressed RefSeqs do not appear in BLAST databases, related sequence links,
or BLAST links (BLink), but may still be retrieved by clicking on their
accession.version below.
-
NR_024175.1: Suppressed sequence
- Description
- NR_024175.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.