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LRP1 Lrp1p [ Saccharomyces cerevisiae S288c ]

Gene ID: 856481, updated on 9-Nov-2014
Gene symbol
LRP1
Gene description
Lrp1p
Primary source
SGD:S000001123
Locus tag
YHR081W
Gene type
protein coding
RNA name
Lrp1p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
RRP47
See LRP1 in MapViewer
Location:
chromosome: VIII
Exon count:
1
Sequence:
Chromosome: VIII; NC_001140.6 (267538..268092)

Chromosome VIII - NC_001140.6Genomic Context describing neighboring genes Neighboring gene Sae3p Neighboring gene hypothetical protein Neighboring gene Ksp1p Neighboring gene Sam35p

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by GO

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
double-stranded RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enzyme regulator activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 
colocalizes_with nuclear exosome (RNase complex) IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Names
Lrp1p
NP_011949.1
  • Nuclear exosome-associated nucleic acid binding protein; involved in RNA processing, surveillance, degradation, tethering, and export; forms a stable heterodimer with Rrp6p and regulates its exonucleolytic activity; rapidly degraded by the proteasome in the absence of Rrp6p; homolog of mammalian nuclear matrix protein C1D involved in regulation of DNA repair and recombination

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001140.6 

    Range
    267538..268092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001179211.1NP_011949.1  Lrp1p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_011949.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P38801
    Conserved Domains (1) summary
    pfam04000
    Location:1089
    Sas10_Utp3; Sas10/Utp3/C1D family