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RAD1 Rad1p [ Saccharomyces cerevisiae S288c ]

Gene ID: 856085, updated on 22-Aug-2014
Gene symbol
RAD1
Gene description
Rad1p
Primary source
SGD:S000005943
Locus tag
YPL022W
Gene type
protein coding
RNA name
Rad1p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
LPB9
See RAD1 in MapViewer
Location:
chromosome: XVI
Exon count:
1
Sequence:
Chromosome: XVI; NC_001148.4 (506697..509999)

Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene Rmi1p Neighboring gene methylenetetrahydrofolate reductase (NAD(P)H) MET12 Neighboring gene Ecm23p Neighboring gene Ulp1p

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
single-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
contributes_to single-stranded DNA endodeoxyribonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
DNA amplification IMP
Inferred from Mutant Phenotype
more info
 
DNA metabolic process IEA
Inferred from Electronic Annotation
more info
 
DNA repair IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
double-strand break repair via homologous recombination IBA
Inferred from Biological aspect of Ancestor
more info
 
double-strand break repair via single-strand annealing, removal of nonhomologous ends IMP
Inferred from Mutant Phenotype
more info
PubMed 
meiotic mismatch repair IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitotic recombination IMP
Inferred from Mutant Phenotype
more info
PubMed 
nucleotide-excision repair, DNA incision, 5'-to lesion IDA
Inferred from Direct Assay
more info
PubMed 
removal of nonhomologous ends IMP
Inferred from Mutant Phenotype
more info
PubMed 
resolution of meiotic recombination intermediates IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
nucleotide-excision repair factor 1 complex IPI
Inferred from Physical Interaction
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Names
Rad1p
NP_015303.1
  • Single-stranded DNA endonuclease (with Rad10p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001148.4 

    Range
    506697..509999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183836.1NP_015303.1  Rad1p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_015303.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P06777
    Conserved Domains (2) summary
    TIGR00596
    Location:2031066
    Blast Score: 3064
    rad1; DNA repair protein (rad1)
    pfam02732
    Location:824968
    Blast Score: 218
    ERCC4; ERCC4 domain