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NAN1 Nan1p [ Saccharomyces cerevisiae S288c ]

Gene ID: 855977, updated on 6-Jul-2014
Gene symbol
NAN1
Gene description
Nan1p
Primary source
SGD:S000006047
Locus tag
YPL126W
Gene type
protein coding
RNA name
Nan1p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
UTP17
See NAN1 in MapViewer
Location:
chromosome: XVI
Exon count :
1
Sequence:
Chromosome: XVI; NC_001148.4 (310210..312900)

Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene Tbf1p Neighboring gene Hho1p Neighboring gene Kap120p Neighboring gene Spc29p

  • Ribosome biogenesis in eukaryotes, organism-specific biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, organism-specific biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
  • Ribosome biogenesis in eukaryotes, conserved biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, conserved biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
mRNA binding IDA
Inferred from Direct Assay
more info
 
snoRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription from RNA polymerase I promoter IMP
Inferred from Mutant Phenotype
more info
PubMed 
rRNA processing IEA
Inferred from Electronic Annotation
more info
 
ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
90S preribosome IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with RENT complex IPI
Inferred from Physical Interaction
more info
PubMed 
nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
rDNA heterochromatin IDA
Inferred from Direct Assay
more info
PubMed 
ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
small-subunit processome IDA
Inferred from Direct Assay
more info
PubMed 
t-UTP complex IDA
Inferred from Direct Assay
more info
PubMed 
Names
Nan1p
NP_015199.1
  • U3 snoRNP protein, component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRNA; required for the biogenesis of18S rRNA

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001148.4 

    Range
    310210..312900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001183940.1NP_015199.1  Nan1p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_015199.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q02931
    Conserved Domains (2) summary
    COG2319
    Location:37423
    Blast Score: 87
    COG2319; FOG: WD40 repeat [General function prediction only]
    cd00200
    Location:258329
    Blast Score: 121
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

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