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    YPL245W hypothetical protein [ Saccharomyces cerevisiae S288c ]

    Gene ID: 855831, updated on 8-Jan-2012
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    Summary

    Gene symbol
    YPL245W
    Gene description
    hypothetical protein
    Primary source
    SGD:S000006166
    Locus tag
    YPL245W
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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    Genomic context

    Sequence :
    Chromosome: XVI; NC_001148.4 (85586..86950)
    See YPL245W in MapViewer

    Chromosome XVI - NC_001148.4Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Rbd2p Neighboring gene Hut1p Neighboring gene Srp68p

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1. Creamer TJ, et al. PLoS Genet, 2011 Oct. PMID 22028667.
    2. The genetic landscape of a cell. Costanzo M, et al. Science, 2010 Jan 22. PMID 20093466.
    3. Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. Batisse J, et al. J Biol Chem, 2009 Dec 11. PMID 19840948.
    4. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Krogan NJ, et al. Nature, 2006 Mar 30. PMID 16554755.
    5. Global analysis of protein localization in budding yeast. Huh WK, et al. Nature, 2003 Oct 16. PMID 14562095.

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:35918 BioGRID:31746 ATS1    BioGRID  PubMed Negative Genetic 
    BioGRID:35918 BioGRID:31537 DCS1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35918 BioGRID:34567 DCS2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35918 BioGRID:36434 ERG11    BioGRID  PubMed Negative Genetic 
    BioGRID:35918 BioGRID:34386 ESC8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35918 BioGRID:36537 GRE3    BioGRID  PubMed Negative Genetic 
    BioGRID:35918 BioGRID:31526 GSY2    BioGRID  PubMed Negative Genetic 
    BioGRID:35918 BioGRID:32995 GUS1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35918 BioGRID:32691 HIR1    BioGRID  PubMed Negative Genetic 
    BioGRID:35918 BioGRID:33129 NAB2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:35918 BioGRID:35588 NRD1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:35918 BioGRID:32098 NRG1    BioGRID  PubMed Negative Genetic 
    BioGRID:35918 BioGRID:31419 STM1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35918 BioGRID:34143 TOF2    BioGRID  PubMed Negative Genetic 
    BioGRID:35918 BioGRID:35008 YIR016W    BioGRID  PubMed Negative Genetic 
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    General gene information

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    nucleoside-triphosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    hypothetical protein
    NP_015079.1
    • hypothetical protein; green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the cytoplasm
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001148.4

      Range
      85586..86950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001184059.1 → NP_015079.1  hypothetical protein YPL245W [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q12179
      Conserved Domains (2) summary
      COG3410
      Location:278 – 454
      Blast Score: 693
      COG3410; Uncharacterized conserved protein [Function unknown]
      pfam09848
      Location:69 – 441
      Blast Score: 1049
      DUF2075; Uncharacterized conserved protein (DUF2075)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006949.2 DAA11192.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q12179.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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