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    YNR048W hypothetical protein [ Saccharomyces cerevisiae S288c ]

    Gene ID: 855784, updated on 4-Feb-2012
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    Summary

    Gene symbol
    YNR048W
    Gene description
    hypothetical protein
    Primary source
    SGD:S000005331
    Locus tag
    YNR048W
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    CRF1
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    Genomic context

    Sequence :
    Chromosome: XIV; NC_001146.8 (711630..712811)
    See YNR048W in MapViewer

    Chromosome XIV - NC_001146.8Genomic Context describing neighboring genes Neighboring gene Trm112p Neighboring gene Fpk1p Neighboring gene Mso1p Neighboring gene Lys9p

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell. Magtanong L, et al. Nat Biotechnol, 2011 May 15. PMID 21572441.
    2. A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking. Aguilar PS, et al. Nat Struct Mol Biol, 2010 Jul. PMID 20526336.
    3. The genetic landscape of a cell. Costanzo M, et al. Science, 2010 Jan 22. PMID 20093466.
    4. A P4-ATPase protein interaction network reveals a link between aminophospholipid transport and phosphoinositide metabolism. Puts CF, et al. J Proteome Res, 2010 Feb 5. PMID 19968326.
    5. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Collins SR, et al. Nature, 2007 Apr 12. PMID 17314980.

    See all (12) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:35873 BioGRID:35900 AIF1    BioGRID  PubMed Negative Genetic 
    BioGRID:35873 BioGRID:36440 ARD1    BioGRID  PubMed Negative Genetic 
    BioGRID:35873 BioGRID:31066 CDC50    BioGRID  PubMed Dosage Rescue; Positive Genetic; Synthetic Growth Defect 
    BioGRID:35873 BioGRID:32038 CDC7    BioGRID  PubMed Two-hybrid 
    BioGRID:35873 BioGRID:34272 CTR9    BioGRID  PubMed Positive Genetic 
    BioGRID:35873 BioGRID:35339 DNF3    BioGRID  PubMed Two-hybrid 
    BioGRID:35873 BioGRID:35002 DSN1    BioGRID  PubMed Dosage Rescue 
    BioGRID:35873 BioGRID:35805 HDA1    BioGRID  PubMed Positive Genetic 
    BioGRID:35873 BioGRID:33845 JSN1    BioGRID  PubMed Two-hybrid 
    BioGRID:35873 BioGRID:35681 LSM7    BioGRID  PubMed Negative Genetic 
    BioGRID:35873 BioGRID:31612 ORM2    BioGRID  PubMed Positive Genetic 
    BioGRID:35873 BioGRID:33628 PBS2    BioGRID  PubMed Positive Genetic 
    BioGRID:35873 BioGRID:35000 PRI1    BioGRID  PubMed Positive Genetic 
    BioGRID:35873 BioGRID:32053 RMD1    BioGRID  PubMed Negative Genetic 
    BioGRID:35873 BioGRID:32750 RPS11B    BioGRID  PubMed Negative Genetic 
    BioGRID:35873 BioGRID:36588 RTT107    BioGRID  PubMed Negative Genetic 
    BioGRID:35873 BioGRID:30988 RVS161    BioGRID  PubMed Negative Genetic 
    BioGRID:35873 BioGRID:36137 SSN3    BioGRID  PubMed Negative Genetic 
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    General gene information

    Homology

    • Homologs of the YNR048W gene: The YNR048W gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.pombe, S.cerevisiae, M.grisea, N.crassa, A.thaliana, and rice.

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    contributes_to phospholipid-translocating ATPase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    response to drug IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    response to drug IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    integral to membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    hypothetical protein
    NP_014446.1
    • Protein that interacts specifically in vivo with phospholipid translocase (flippase) Dnf3p; similar to Cdc50p, which is an essential interaction partner of the flippase Drs2p
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001146.8

      Range
      711630..712811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001183225.1 → NP_014446.1  hypothetical protein YNR048W [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P53740
      Conserved Domains (1) summary
      cl02095
      Location:3 – 375
      Blast Score: 1495
      CDC50; LEM3 (ligand-effect modulator 3) family / CDC50 family
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006947.3 DAA10589.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    P53740.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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