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    RPL16B Rpl16bp [ Saccharomyces cerevisiae S288c ]

    Gene ID: 855655, updated on 8-Jan-2012
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    Summary

    Gene symbol
    RPL16B
    Gene description
    Rpl16bp
    Primary source
    SGD:S000005013
    Locus tag
    YNL069C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    RP23
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    Genomic context

    Sequence :
    Chromosome: XIV; NC_001146.8 (493956..495001, complement)
    See RPL16B in MapViewer

    Chromosome XIV - NC_001146.8Genomic Context describing neighboring genes Neighboring gene Lat1p Neighboring gene Tom7p Neighboring gene Fkh2p Neighboring gene hypothetical protein

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Sites of ubiquitin attachment in Saccharomyces cerevisiae. Starita LM, et al. Proteomics, 2012 Jan. PMID 22106047.
    2. Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing. Sahasranaman A, et al. EMBO J, 2011 Sep 16. PMID 21926967.
    3. Dynamics of the putative RNA helicase Spb4 during ribosome assembly in Saccharomyces cerevisiae. García-Gómez JJ, et al. Mol Cell Biol, 2011 Oct. PMID 21825077.
    4. Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexes. Drummond SP, et al. Nucleic Acids Res, 2011 Sep 1. PMID 21712243.
    5. Srs2 overexpression reveals a helicase-independent role at replication forks that requires diverse cell functions. León Ortiz AM, et al. DNA Repair (Amst), 2011 May 5. PMID 21459050.

    See all (39) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:35754 BioGRID:34001 APL2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36562 ARP1    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35754 BioGRID:35876 BRE5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34850 CCT2    BioGRID  PubMed Dosage Rescue 
    BioGRID:35754 BioGRID:31918 CCT4    BioGRID  PubMed Dosage Rescue 
    BioGRID:35754 BioGRID:31825 CDC13    BioGRID  PubMed Synthetic Rescue 
    BioGRID:35754 BioGRID:32107 CDC34    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35754 BioGRID:34599 DED1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31903 DHH1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35002 DSN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32415 EAF1    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35754 BioGRID:36392 ECM29    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34635 ESA1    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35754 BioGRID:32186 FIN1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:35754 BioGRID:31604 FKS1    BioGRID  PubMed Synthetic Growth Defect; Synthetic Lethality 
    BioGRID:35754 BioGRID:35584 GIS2    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-RNA 
    BioGRID:35754 BioGRID:35470 HAS1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33727 HCA4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36162 HST2    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:35754 BioGRID:35474 JNM1    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35754 BioGRID:31610 KAP95    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34866 KGD1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34123 MRT4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:35754 BioGRID:35703 NAF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32040 NOP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35715 NOP15    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35101 ORC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32280 PCF11    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31035 PWP2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33033 RAI1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31315 RIC1    BioGRID  PubMed Synthetic Lethality 
    BioGRID:35754 BioGRID:34212 RPF2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31349 RPL10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36268 RPL11A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33327 RPL11B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32476 RPL12B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31979 RPL13A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35318 RPL13B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36424 RPL14B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31303 RPL15A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34858 RPL16A    BioGRID  PubMed Affinity Capture-MS; Dosage Rescue; Synthetic Lethality 
    BioGRID:35754 BioGRID:33959 RPL17A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33584 RPL17B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34281 RPL18A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35537 RPL18B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32789 RPL19A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32671 RPL19B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35965 RPL1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33117 RPL1B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35421 RPL20A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34700 RPL20B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32888 RPL21A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33215 RPL24A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34248 RPL25    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33279 RPL26B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36437 RPL27A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32524 RPL27B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33147 RPL28    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31187 RPL2A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34970 RPL2B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34462 RPL3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33216 RPL30    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31986 RPL31A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32611 RPL32    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36040 RPL33A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31854 RPL35A    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:35754 BioGRID:31925 RPL35B    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:35754 BioGRID:35372 RPL36A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35913 RPL36B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36574 RPL42B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32733 RPL4A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32063 RPL4B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35068 RPL6A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31706 RPL6B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33174 RPL7A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35986 RPL7B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36389 RPL8A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31269 RPL8B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33105 RPL9A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36458 RPN1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36634 RPN10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31152 RPN11    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31602 RPP0    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34363 RPP2A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32443 RPP2B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32075 RPS11A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32750 RPS11B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32119 RPS13    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31014 RPS14A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34362 RPS15    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31978 RPS16B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32502 RPS17B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32505 RPS18A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31700 RPS1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35103 RPS1B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33573 RPS22A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36817 RPS24A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34923 RPS24B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35653 RPS3    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:35754 BioGRID:31553 RPS30A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33901 RPS4A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36637 RPS4B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33879 RPS5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36091 RPS6A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32879 RPS6B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34494 RPS7A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:35728 RPS7B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32887 RPS9B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34513 RPT5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36311 RRP15    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32561 SMT3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31147 SPB4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:33665 SRS2    BioGRID  PubMed Dosage Lethality 
    BioGRID:35754 BioGRID:31419 STM1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32225 SUP35    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32457 SXM1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:34574 SYC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:32266 TCP1    BioGRID  PubMed Dosage Rescue 
    BioGRID:35754 BioGRID:36218 TIF5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31215 UBI4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:36901 UBP3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:35754 BioGRID:31529 YPT6    BioGRID  PubMed Synthetic Lethality 
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    General gene information

    Homology

    Pathways from BioSystems

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    cytoplasmic translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    cytosolic large ribosomal subunit TAS
    Traceable Author Statement
    more info
    		 PubMed 
    large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		  
    ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    Rpl16bp
    NP_014330.1
    • N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001146.8

      Range
      493956..495001, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182907.1 → NP_014330.1  Rpl16bp [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P26785
      Conserved Domains (2) summary
      cd00392
      Location:6 – 107
      Blast Score: 270
      Ribosomal_L13; Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the ...
      PTZ00068
      Location:1 – 198
      Blast Score: 686
      PTZ00068; 60S ribosomal protein L13a; Provisional
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006947.3 DAA10476.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    P26785.3 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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