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ATG16 Atg16p [ Saccharomyces cerevisiae S288c ]

Gene ID: 855194, updated on 22-Aug-2014
Gene symbol
ATG16
Gene description
Atg16p
Primary source
SGD:S000004769
Locus tag
YMR159C
Gene type
protein coding
RNA name
Atg16p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
APG15; APG16; CVT11; SAP18
See ATG16 in MapViewer
Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (574476..574928, complement)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene tRNA Neighboring gene hypothetical protein Neighboring gene Hlj1p

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by GO

Function Evidence Code Pubs
contributes_to Atg8 ligase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein binding, bridging IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
C-terminal protein lipidation IMP
Inferred from Mutant Phenotype
more info
PubMed 
CVT pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
autophagy IEA
Inferred from Electronic Annotation
more info
 
late nucleophagy IMP
Inferred from Mutant Phenotype
more info
 
macroautophagy IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrion degradation IMP
Inferred from Mutant Phenotype
more info
PubMed 
piecemeal microautophagy of nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Atg12-Atg5-Atg16 complex IDA
Inferred from Direct Assay
more info
PubMed 
Atg12-Atg5-Atg16 complex IPI
Inferred from Physical Interaction
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
 
pre-autophagosomal structure IDA
Inferred from Direct Assay
more info
PubMed 
pre-autophagosomal structure membrane IEA
Inferred from Electronic Annotation
more info
 
Names
Atg16p
NP_013882.1
  • Conserved protein involved in autophagy; interacts with Atg12p-Atg5p conjugates to form Atg12p-Atg5p-Atg16p multimers, which binds to membranes and localizes to the pre-autophagosomal structure and are required for autophagy; relocalizes from nucleus to cytoplasmic foci upon DNA replication stress

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 

    Range
    574476..574928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182663.1NP_013882.1  Atg16p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_013882.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q03818
    Conserved Domains (1) summary
    pfam08614
    Location:16144
    Blast Score: 211
    ATG16; Autophagy protein 16 (ATG16)