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YIL082W-A gag-pol fusion protein [ Saccharomyces cerevisiae S288c ]

Gene ID: 854728, updated on 3-Aug-2014
Gene symbol
YIL082W-A
Gene description
gag-pol fusion protein
Primary source
SGD:S000003537
Locus tag
YIL082W-A
Gene type
protein coding
RNA name
gag-pol fusion protein
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
See YIL082W-A in MapViewer
Location:
chromosome: IX
Exon count:
2
Sequence:
Chromosome: IX; NC_001141.2 (205635..210132)

Chromosome IX - NC_001141.2Genomic Context describing neighboring genes Neighboring gene Sds3p Neighboring gene phosphopantothenate--cysteine ligase CAB2 Neighboring gene tRNA Neighboring gene Air1p

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by GO

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
DNA-directed DNA polymerase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 
RNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
RNA-directed DNA polymerase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
peptidase activity IEA
Inferred from Electronic Annotation
more info
 
peptidase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
ribonuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA integration IEA
Inferred from Electronic Annotation
more info
 
DNA recombination IEA
Inferred from Electronic Annotation
more info
 
DNA-dependent DNA replication IEA
Inferred from Electronic Annotation
more info
 
RNA phosphodiester bond hydrolysis, endonucleolytic IEA
Inferred from Electronic Annotation
more info
 
RNA-dependent DNA replication IEA
Inferred from Electronic Annotation
more info
 
metabolic process IEA
Inferred from Electronic Annotation
more info
 
nucleic acid phosphodiester bond hydrolysis IEA
Inferred from Electronic Annotation
more info
 
proteolysis IEA
Inferred from Electronic Annotation
more info
 
transposition, RNA-mediated ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
viral release from host cell IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
retrotransposon nucleocapsid ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Names
gag-pol fusion protein
NP_012184.1
  • Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001141.2 

    Range
    205635..210132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181434.3NP_012184.1  gag-pol fusion protein [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_012184.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q7LHG5
    Conserved Domains (7) summary
    cd00303
    Location:323412
    Blast Score: 186
    retropepsin_like; Retropepsins; pepsin-like aspartate proteases
    pfam09337
    Location:11381172
    Blast Score: 87
    zf-H2C2; His(2)-Cys(2) zinc finger
    cd01647
    Location:649823
    Blast Score: 700
    RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
    pfam00078
    Location:665823
    Blast Score: 359
    RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
    pfam00665
    Location:11981308
    Blast Score: 221
    rve; Integrase core domain
    pfam03732
    Location:70157
    Blast Score: 101
    Retrotrans_gag; Retrotransposon gag protein
    cd09274
    Location:9151034
    Blast Score: 425
    RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements