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Gata3 GATA binding protein 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 85471, updated on 26-May-2016
Official Symbol
Gata3provided by RGD
Official Full Name
GATA binding protein 3provided by RGD
Primary source
RGD:621250
See related
Ensembl:ENSRNOG00000019336
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
transcription factor which is responsible for Th2 commitment during anterior chamber associated immune deviation development [RGD, Feb 2006]
Orthologs
Location:
17q12.3
Exon count:
8
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (72426950..72452043)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 17 NC_005116.3 (74114785..74137119)

Chromosome 17 - NC_005116.4Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 3 Neighboring gene uncharacterized LOC102546306 Neighboring gene uncharacterized LOC102546508 Neighboring gene uncharacterized LOC102546657 Neighboring gene uncharacterized LOC102546763

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
E-box binding ISO
Inferred from Sequence Orthology
more info
 
E-box binding ISS
Inferred from Sequence or Structural Similarity
more info
 
HMG box domain binding IEA
Inferred from Electronic Annotation
more info
 
HMG box domain binding ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II core promoter sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II core promoter sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
RNA polymerase II regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
core promoter proximal region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
core promoter proximal region sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
core promoter sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enhancer sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enhancer sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
interleukin-2 receptor binding IEA
Inferred from Electronic Annotation
more info
 
interleukin-2 receptor binding ISO
Inferred from Sequence Orthology
more info
 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
protein dimerization activity ISO
Inferred from Sequence Orthology
more info
 
sequence-specific DNA binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
transcription coactivator activity ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription factor activity, sequence-specific DNA binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription factor activity, sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding IEA
Inferred from Electronic Annotation
more info
 
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding ISO
Inferred from Sequence Orthology
more info
 
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding IBA
Inferred from Biological aspect of Ancestor
more info
 
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding ISO
Inferred from Sequence Orthology
more info
 
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding ISS
Inferred from Sequence or Structural Similarity
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
T cell differentiation ISO
Inferred from Sequence Orthology
more info
 
T cell differentiation in thymus ISO
Inferred from Sequence Orthology
more info
 
T cell receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
T cell receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
T-helper 2 cell differentiation IEA
Inferred from Electronic Annotation
more info
 
T-helper 2 cell differentiation ISO
Inferred from Sequence Orthology
more info
 
TOR signaling ISO
Inferred from Sequence Orthology
more info
 
TOR signaling ISS
Inferred from Sequence or Structural Similarity
more info
 
anatomical structure formation involved in morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
anatomical structure formation involved in morphogenesis ISO
Inferred from Sequence Orthology
more info
 
anatomical structure formation involved in morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
aortic valve morphogenesis ISO
Inferred from Sequence Orthology
more info
 
aortic valve morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
axon guidance IEA
Inferred from Electronic Annotation
more info
 
axon guidance ISO
Inferred from Sequence Orthology
more info
 
canonical Wnt signaling pathway involved in metanephric kidney development ISO
Inferred from Sequence Orthology
more info
 
canonical Wnt signaling pathway involved in metanephric kidney development ISS
Inferred from Sequence or Structural Similarity
more info
 
cardiac right ventricle morphogenesis ISO
Inferred from Sequence Orthology
more info
 
cardiac right ventricle morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
cell activation ISO
Inferred from Sequence Orthology
more info
 
cell development IBA
Inferred from Biological aspect of Ancestor
more info
 
cell fate commitment IBA
Inferred from Biological aspect of Ancestor
more info
 
cell fate determination ISO
Inferred from Sequence Orthology
more info
 
cell fate determination ISS
Inferred from Sequence or Structural Similarity
more info
 
cell maturation IEA
Inferred from Electronic Annotation
more info
 
cell maturation ISO
Inferred from Sequence Orthology
more info
 
cell morphogenesis ISO
Inferred from Sequence Orthology
more info
 
cellular response to BMP stimulus IEA
Inferred from Electronic Annotation
more info
 
cellular response to BMP stimulus ISO
Inferred from Sequence Orthology
more info
 
cellular response to cytokine stimulus ISO
Inferred from Sequence Orthology
more info
 
cellular response to interferon-alpha IEA
Inferred from Electronic Annotation
more info
 
cellular response to interferon-alpha ISO
Inferred from Sequence Orthology
more info
 
cellular response to interleukin-4 IEA
Inferred from Electronic Annotation
more info
 
cellular response to interleukin-4 ISO
Inferred from Sequence Orthology
more info
 
cellular response to tumor necrosis factor IEA
Inferred from Electronic Annotation
more info
 
cellular response to tumor necrosis factor ISO
Inferred from Sequence Orthology
more info
 
chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 
chromatin remodeling ISO
Inferred from Sequence Orthology
more info
 
cochlea development IEP
Inferred from Expression Pattern
more info
PubMed 
developmental growth IEA
Inferred from Electronic Annotation
more info
 
developmental growth ISO
Inferred from Sequence Orthology
more info
 
digestive tract development IBA
Inferred from Biological aspect of Ancestor
more info
 
ear development ISO
Inferred from Sequence Orthology
more info
 
ear development ISS
Inferred from Sequence or Structural Similarity
more info
 
embryonic hemopoiesis IEA
Inferred from Electronic Annotation
more info
 
embryonic hemopoiesis ISO
Inferred from Sequence Orthology
more info
 
embryonic organ development ISO
Inferred from Sequence Orthology
more info
 
erythrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 
erythrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
heart development IBA
Inferred from Biological aspect of Ancestor
more info
 
homeostasis of number of cells ISO
Inferred from Sequence Orthology
more info
 
humoral immune response IEA
Inferred from Electronic Annotation
more info
 
humoral immune response ISO
Inferred from Sequence Orthology
more info
 
in utero embryonic development IEA
Inferred from Electronic Annotation
more info
 
in utero embryonic development ISO
Inferred from Sequence Orthology
more info
 
inner ear morphogenesis IEA
Inferred from Electronic Annotation
more info
 
inner ear morphogenesis ISO
Inferred from Sequence Orthology
more info
 
interferon-gamma secretion IEA
Inferred from Electronic Annotation
more info
 
interferon-gamma secretion ISO
Inferred from Sequence Orthology
more info
 
interleukin-4 secretion IEA
Inferred from Electronic Annotation
more info
 
interleukin-4 secretion ISO
Inferred from Sequence Orthology
more info
 
kidney development ISO
Inferred from Sequence Orthology
more info
 
kidney development ISS
Inferred from Sequence or Structural Similarity
more info
 
lens development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 
lens development in camera-type eye ISO
Inferred from Sequence Orthology
more info
 
lymphocyte migration ISO
Inferred from Sequence Orthology
more info
 
lymphocyte migration ISS
Inferred from Sequence or Structural Similarity
more info
 
male gonad development ISO
Inferred from Sequence Orthology
more info
 
male gonad development ISS
Inferred from Sequence or Structural Similarity
more info
 
mast cell differentiation IEA
Inferred from Electronic Annotation
more info
 
mast cell differentiation ISO
Inferred from Sequence Orthology
more info
 
mesenchymal to epithelial transition ISO
Inferred from Sequence Orthology
more info
 
mesenchymal to epithelial transition ISS
Inferred from Sequence or Structural Similarity
more info
 
mesonephros development ISO
Inferred from Sequence Orthology
more info
 
mesonephros development ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of DNA demethylation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of DNA demethylation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell cycle ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell cycle ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of cell motility ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell motility ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of cell proliferation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of cell proliferation involved in mesonephros development ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell proliferation involved in mesonephros development ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of endothelial cell apoptotic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of endothelial cell apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of fat cell differentiation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of fat cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of inflammatory response ISO
Inferred from Sequence Orthology
more info
 
negative regulation of inflammatory response ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of interferon-gamma production IEA
Inferred from Electronic Annotation
more info
 
negative regulation of interferon-gamma production ISO
Inferred from Sequence Orthology
more info
 
negative regulation of interleukin-2 production IEA
Inferred from Electronic Annotation
more info
 
negative regulation of interleukin-2 production ISO
Inferred from Sequence Orthology
more info
 
negative regulation of mammary gland epithelial cell proliferation IEA
Inferred from Electronic Annotation
more info
 
negative regulation of mammary gland epithelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
nephric duct formation ISO
Inferred from Sequence Orthology
more info
 
nephric duct formation ISS
Inferred from Sequence or Structural Similarity
more info
 
nephric duct morphogenesis ISO
Inferred from Sequence Orthology
more info
 
nephric duct morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
nervous system development ISO
Inferred from Sequence Orthology
more info
 
neuron differentiation ISO
Inferred from Sequence Orthology
more info
 
neuron migration IEA
Inferred from Electronic Annotation
more info
 
neuron migration ISO
Inferred from Sequence Orthology
more info
 
norepinephrine biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
norepinephrine biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 
organ morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
otic vesicle development IEA
Inferred from Electronic Annotation
more info
 
otic vesicle development ISO
Inferred from Sequence Orthology
more info
 
parathyroid gland development IEA
Inferred from Electronic Annotation
more info
 
parathyroid gland development ISO
Inferred from Sequence Orthology
more info
 
parathyroid hormone secretion IEA
Inferred from Electronic Annotation
more info
 
parathyroid hormone secretion ISO
Inferred from Sequence Orthology
more info
 
pharyngeal system development ISO
Inferred from Sequence Orthology
more info
 
pharyngeal system development ISS
Inferred from Sequence or Structural Similarity
more info
 
phosphatidylinositol 3-kinase signaling ISO
Inferred from Sequence Orthology
more info
 
phosphatidylinositol 3-kinase signaling ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of T cell differentiation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of T cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of T-helper 2 cell cytokine production IEA
Inferred from Electronic Annotation
more info
 
positive regulation of T-helper 2 cell cytokine production ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell differentiation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cytokine production ISO
Inferred from Sequence Orthology
more info
 
positive regulation of endothelial cell migration ISO
Inferred from Sequence Orthology
more info
 
positive regulation of endothelial cell migration ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
positive regulation of histone H3-K14 acetylation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of histone H3-K14 acetylation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of histone H3-K9 acetylation IEA
Inferred from Electronic Annotation
more info
 
positive regulation of histone H3-K9 acetylation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interleukin-13 production ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interleukin-13 secretion ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interleukin-13 secretion ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of interleukin-4 production ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interleukin-4 production ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of interleukin-5 production ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interleukin-5 secretion ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interleukin-5 secretion ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of protein kinase B signaling ISO
Inferred from Sequence Orthology
more info
 
positive regulation of protein kinase B signaling ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of signal transduction ISO
Inferred from Sequence Orthology
more info
 
positive regulation of signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of thyroid hormone generation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of thyroid hormone generation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription from RNA polymerase II promoter ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription regulatory region DNA binding ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription regulatory region DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of ureteric bud formation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of ureteric bud formation ISS
Inferred from Sequence or Structural Similarity
more info
 
post-embryonic development IEA
Inferred from Electronic Annotation
more info
 
post-embryonic development ISO
Inferred from Sequence Orthology
more info
 
pro-T cell differentiation IEA
Inferred from Electronic Annotation
more info
 
pro-T cell differentiation ISO
Inferred from Sequence Orthology
more info
 
regulation of CD4-positive, alpha-beta T cell differentiation IEA
Inferred from Electronic Annotation
more info
 
regulation of CD4-positive, alpha-beta T cell differentiation ISO
Inferred from Sequence Orthology
more info
 
regulation of cellular response to X-ray ISO
Inferred from Sequence Orthology
more info
 
regulation of cellular response to X-ray ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of cytokine biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
regulation of cytokine biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of establishment of cell polarity IEA
Inferred from Electronic Annotation
more info
 
regulation of establishment of cell polarity ISO
Inferred from Sequence Orthology
more info
 
regulation of histone H3-K27 methylation IEA
Inferred from Electronic Annotation
more info
 
regulation of histone H3-K27 methylation ISO
Inferred from Sequence Orthology
more info
 
regulation of histone H3-K4 methylation IEA
Inferred from Electronic Annotation
more info
 
regulation of histone H3-K4 methylation ISO
Inferred from Sequence Orthology
more info
 
regulation of nephron tubule epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
regulation of nephron tubule epithelial cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 
regulation of neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
 
regulation of neuron projection development IEA
Inferred from Electronic Annotation
more info
 
regulation of neuron projection development ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
renal system development ISO
Inferred from Sequence Orthology
more info
 
response to drug IEP
Inferred from Expression Pattern
more info
PubMed 
response to estrogen IEA
Inferred from Electronic Annotation
more info
 
response to estrogen ISO
Inferred from Sequence Orthology
more info
 
response to ethanol IEP
Inferred from Expression Pattern
more info
PubMed 
response to gamma radiation IEP
Inferred from Expression Pattern
more info
PubMed 
response to virus IEA
Inferred from Electronic Annotation
more info
 
response to virus ISO
Inferred from Sequence Orthology
more info
 
signal transduction ISO
Inferred from Sequence Orthology
more info
 
signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 
sympathetic nervous system development ISO
Inferred from Sequence Orthology
more info
 
sympathetic nervous system development ISS
Inferred from Sequence or Structural Similarity
more info
 
thymic T cell selection IEA
Inferred from Electronic Annotation
more info
 
thymic T cell selection ISO
Inferred from Sequence Orthology
more info
 
thymus development IEA
Inferred from Electronic Annotation
more info
 
thymus development ISO
Inferred from Sequence Orthology
more info
 
tissue development IBA
Inferred from Biological aspect of Ancestor
more info
 
transcription from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
type IV hypersensitivity IEP
Inferred from Expression Pattern
more info
PubMed 
ureter maturation IEA
Inferred from Electronic Annotation
more info
 
ureter maturation ISO
Inferred from Sequence Orthology
more info
 
ureteric bud formation ISO
Inferred from Sequence Orthology
more info
 
ureteric bud formation ISS
Inferred from Sequence or Structural Similarity
more info
 
uterus development ISO
Inferred from Sequence Orthology
more info
 
uterus development ISS
Inferred from Sequence or Structural Similarity
more info
 
ventricular septum development ISO
Inferred from Sequence Orthology
more info
 
ventricular septum development ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
nuclear chromatin ISO
Inferred from Sequence Orthology
more info
 
nuclear chromatin ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus IC
Inferred by Curator
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
trans-acting T-cell-specific transcription factor GATA-3
Names
GATA-binding protein 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133293.1NP_579827.1  trans-acting T-cell-specific transcription factor GATA-3

    See identical proteins and their annotated locations for NP_579827.1

    Status: PROVISIONAL

    Source sequence(s)
    AY024364
    UniProtKB/TrEMBL
    Q99NH5
    Conserved Domains (2) summary
    smart00401
    Location:313362
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:317367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005116.4 Reference Rnor_6.0 Primary Assembly

    Range
    72426950..72452043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008771894.1XP_008770116.1  

    See identical proteins and their annotated locations for XP_008770116.1

    UniProtKB/TrEMBL
    Q99NH5
    Conserved Domains (2) summary
    smart00401
    Location:313362
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:317367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
  2. XM_006254253.2XP_006254315.1  

    See identical proteins and their annotated locations for XP_006254315.1

    UniProtKB/TrEMBL
    Q99NH5
    Related
    ENSRNOP00000026187, ENSRNOT00000026187
    Conserved Domains (2) summary
    smart00401
    Location:313362
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:317367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
  3. XM_008771893.1XP_008770115.1  

    See identical proteins and their annotated locations for XP_008770115.1

    UniProtKB/TrEMBL
    Q99NH5
    Conserved Domains (2) summary
    smart00401
    Location:313362
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd00202
    Location:317367
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Alternate Rn_Celera

Genomic

  1. AC_000085.1 Alternate Rn_Celera

    Range
    68131695..68151337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)