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    TSR3 Tsr3p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 854167, updated on 4-Feb-2012
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    Summary

    Gene symbol
    TSR3
    Gene description
    Tsr3p
    Primary source
    SGD:S000005532
    Locus tag
    YOR006C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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    Genomic context

    Sequence :
    Chromosome: XV; NC_001147.6 (337680..338621, complement)
    See TSR3 in MapViewer

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Utp23p Neighboring gene Dnl4p Neighboring gene Sgt2p Neighboring gene tRNA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Clathrin light chain directs endocytosis by influencing the binding of the yeast Hip1R homologue, Sla2, to F-actin. Boettner DR, et al. Mol Biol Cell, 2011 Oct. PMID 21849475.
    2. Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins. Scherrer T, et al. Genome Biol, 2011. PMID 21232131.
    3. The genetic landscape of a cell. Costanzo M, et al. Science, 2010 Jan 22. PMID 20093466.
    4. Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. Batisse J, et al. J Biol Chem, 2009 Dec 11. PMID 19840948.
    5. Rational extension of the ribosome biogenesis pathway using network-guided genetics. Li Z, et al. PLoS Biol, 2009 Oct. PMID 19806183.

    See all (11) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:34409 BioGRID:36693 ANP1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:33145 ARC1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:31121 BST1    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:31066 CDC50    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:32038 CDC7    BioGRID  PubMed Two-hybrid 
    BioGRID:34409 BioGRID:32353 CFT1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:31478 CLB4    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:33419 CLC1    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:32232 CSN9    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:33172 DBP3    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:34447 DBP5    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:31148 DEG1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:31740 DRS2    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:31787 EFB1    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:35635 GCR2    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:34516 GCY1    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:35584 GIS2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:34409 BioGRID:32665 HEK2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:34409 BioGRID:34440 HIR2    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:36855 KAP123    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:30927 KRR1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:32092 KRS1    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:33632 LSM1    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:31697 LSM3    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:34110 MAK11    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:35513 MDJ2    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:34944 MET30    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:33129 NAB2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:34409 BioGRID:35715 NOP15    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:36732 NOP16    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:36918 PAB1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:32148 RLI1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:32053 RMD1    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:33610 RPA34    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:31911 RPC53    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:33268 RPS25A    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:30952 RRP7    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:32139 RRP8    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:36865 SCS2    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:31657 SKI2    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:31964 SNU23    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:35859 SOL1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:33725 TAD2    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:36026 TGS1    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:35609 URE2    BioGRID  PubMed Negative Genetic 
    BioGRID:34409 BioGRID:33686 UTP18    BioGRID  PubMed Positive Genetic 
    BioGRID:34409 BioGRID:31421 YLR152C    BioGRID  PubMed Negative Genetic 
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    General gene information

    Homology

    • Homologs of the TSR3 gene: The TSR3 gene is conserved in human, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.pombe, S.cerevisiae, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice.

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    maturation of SSU-rRNA IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    Tsr3p
    NP_014648.1
    • Protein required for correct processing of the 20S pre-rRNA at site D to generate mature 18S rRNA; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6

      Range
      337680..338621, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001183425.1 → NP_014648.1  Tsr3p [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q12094
      Conserved Domains (3) summary
      COG2042
      Location:34 – 214
      Blast Score: 688
      COG2042; Uncharacterized conserved protein [Function unknown]
      pfam04034
      Location:84 – 211
      Blast Score: 585
      DUF367; Domain of unknown function (DUF367)
      pfam04068
      Location:46 – 80
      Blast Score: 156
      RLI; Possible Fer4-like domain in RNase L inhibitor, RLI
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006948.2 DAA10788.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q12094.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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