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RPL40B ubiquitin-ribosomal 60S subunit protein L40B fusion protein [ Saccharomyces cerevisiae S288c ]

Gene ID: 853969, updated on 7-Aug-2016
Gene symbol
RPL40B
Gene description
ubiquitin-ribosomal 60S subunit protein L40B fusion protein
Primary source
SGD:S000001802
Locus tag
YKR094C
Gene type
protein coding
RNA name
ubiquitin-ribosomal 60S subunit protein L40B fusion protein
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
CEP52B; UB12; UBI2
See RPL40B in Map Viewer
Location:
chromosome: XI
Exon count:
2
Sequence:
Chromosome: XI; NC_001143.9 (617996..618750, complement)

Chromosome XI - NC_001143.9Genomic Context describing neighboring genes Neighboring gene Srp40p Neighboring gene Ptr2p Neighboring gene Mlp1p Neighboring gene chromatin DNA-binding EKC/KEOPS complex subunit PCC1

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
protein tag ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
structural constituent of ribosome IC
Inferred by Curator
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cytoplasmic translation IC
Inferred by Curator
more info
PubMed 
protein ubiquitination IMP
Inferred from Mutant Phenotype
more info
PubMed 
ribosomal large subunit assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
ribosomal large subunit export from nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
ribosome biogenesis IDA
Inferred from Direct Assay
more info
PubMed 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
Names
ubiquitin-ribosomal 60S subunit protein L40B fusion protein
NP_013020.3
  • Ubiquitin-ribosomal 60S subunit protein L40B fusion protein; cleaved to yield ubiquitin and ribosomal protein L40B; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; homologous to mammalian ribosomal protein L40, no bacterial homolog; RPL40B has a paralog, RPL40A, that arose from the whole genome duplication

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001143.9 Reference assembly

    Range
    617996..618750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001179884.3NP_013020.3  ubiquitin-ribosomal 60S subunit protein L40B fusion protein [Saccharomyces cerevisiae S288c]

    See identical proteins and their annotated locations for NP_013020.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0CH08, P0CH09
    Conserved Domains (3) summary
    cd01803
    Location:176
    Ubiquitin; Ubiquitin
    smart00213
    Location:172
    UBQ; Ubiquitin homologues
    pfam01020
    Location:78126
    Ribosomal_L40e; Ribosomal L40e family