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ABF1 DNA-binding protein ABF1 [ Saccharomyces cerevisiae S288c ]

Gene ID: 853748, updated on 4-Sep-2016
Gene symbol
ABF1
Gene description
DNA-binding protein ABF1
Primary source
SGD:S000001595
Locus tag
YKL112W
Gene type
protein coding
RNA name
DNA-binding protein ABF1
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
BAF1; OBF1; REB2; SBF1
See ABF1 in Map Viewer
Location:
chromosome: XI
Exon count:
1
Sequence:
Chromosome: XI; NC_001143.9 (226570..228765)

Chromosome XI - NC_001143.9Genomic Context describing neighboring genes Neighboring gene DNA-(apurinic or apyrimidinic site) lyase APN1 Neighboring gene multifunctional nuclease RAD27 Neighboring gene Kti12p Neighboring gene transcription factor HAP4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by GO

Process Evidence Code Pubs
DNA repair IEA
Inferred from Electronic Annotation
more info
 
DNA replication IEA
Inferred from Electronic Annotation
more info
 
DNA-dependent DNA replication IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
chromatin remodeling IDA
Inferred from Direct Assay
more info
PubMed 
chromatin remodeling IGI
Inferred from Genetic Interaction
more info
PubMed 
chromatin silencing at silent mating-type cassette IMP
Inferred from Mutant Phenotype
more info
PubMed 
global genome nucleotide-excision repair IDA
Inferred from Direct Assay
more info
PubMed 
global genome nucleotide-excision repair IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of transcription from RNA polymerase II promoter IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleotide-excision repair factor 4 complex IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
Names
DNA-binding protein ABF1
NP_012810.1
  • DNA binding protein with possible chromatin-reorganizing activity; involved in transcriptional activation, gene silencing, and DNA replication and repair

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001143.9 Reference assembly

    Range
    226570..228765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001179678.1NP_012810.1  DNA-binding protein ABF1 [Saccharomyces cerevisiae S288c]

    See identical proteins and their annotated locations for NP_012810.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P14164
    Conserved Domains (1) summary
    pfam04684
    Location:6731
    BAF1_ABF1; BAF1 / ABF1 chromatin reorganizing factor
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