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    CBT1 Cbt1p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 853673, updated on 8-Jan-2012
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    Summary

    Gene symbol
    CBT1
    Gene description
    Cbt1p
    Primary source
    SGD:S000001691
    Locus tag
    YKL208W
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    SOC1
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    Genomic context

    Sequence :
    Chromosome: XI; NC_001143.9 (47157..47972)
    See CBT1 in MapViewer

    Chromosome XI - NC_001143.9Genomic Context describing neighboring genes Neighboring gene Ste6p Neighboring gene tRNA Neighboring gene Aim27p Neighboring gene Add66p

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria. Hoppins S, et al. J Cell Biol, 2011 Oct 17. PMID 21987634.
    2. Dynamics of the putative RNA helicase Spb4 during ribosome assembly in Saccharomyces cerevisiae. García-Gómez JJ, et al. Mol Cell Biol, 2011 Oct. PMID 21825077.
    3. The genetic landscape of a cell. Costanzo M, et al. Science, 2010 Jan 22. PMID 20093466.
    4. Functional organization of the S. cerevisiae phosphorylation network. Fiedler D, et al. Cell, 2009 Mar 6. PMID 19269370.
    5. A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Wilmes GM, et al. Mol Cell, 2008 Dec 5. PMID 19061648.

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Null strains have defects in 5'-end processing of precursor cytochrome b mRNA to the mature form.
      Title: CBT1 interacts genetically with CBP1 and the mitochondrially encoded cytochrome b gene and is required to stabilize the mature cytochrome b mRNA of Saccharomyces cerevisiae.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:33958 BioGRID:35524 ATP11    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33581 ATP12    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36066 BEM3    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33696 BIT61    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35605 BNI4    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:36344 BSP1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36385 CBP2    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:31825 CDC13    BioGRID  PubMed Synthetic Rescue 
    BioGRID:33958 BioGRID:31676 CDC73    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31402 CKI1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35773 COG5    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:33001 CSE1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36001 CTI6    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35358 CTL1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36448 DED81    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:31148 DEG1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34432 DFG16    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34699 DGK1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:34131 DID4    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32972 DPB3    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33205 DST1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:34894 FYV10    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31354 GAL2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36762 GAL83    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33631 GCD14    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33325 GCD2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31364 GEP5    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:33714 GYP6    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32099 HEM13    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35473 HER2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35796 HHT2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35204 HOF1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:31384 HOG1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35180 HXT2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31993 IDP1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34378 IFM1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:34505 INP53    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:34321 IRA2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31947 IWR1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:34169 KAE1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34907 KTR7    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35819 LST8    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33993 LTV1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:33539 MAL11    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34543 MDM32    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32272 MFB1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:30940 MGR1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31245 MMM1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34183 MRS4    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36223 MSF1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:35194 MSS1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31641 NAM2    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:34179 NAP1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35465 NGL2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32040 NOP1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:31467 NOP56    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:36851 NUP157    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:35724 OCA1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36047 ODC1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32369 OMS1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34483 OST3    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33628 PBS2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35548 PCL1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33233 PDR1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35198 PEX12    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34401 PFA4    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33492 PFK1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35280 PGM2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33380 PHB1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35445 PPA2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35659 PSD1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36819 PTP3    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36692 RAD23    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31357 RAX2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33564 REE1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35591 RPA49    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36424 RPL14B    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:35536 RPS19B    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:31553 RPS30A    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:32047 RPT2    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:36311 RRP15    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:30952 RRP7    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:35441 SAP30    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36296 SCD6    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31885 SHS1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35603 SIN4    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32481 SIP1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35582 SIP3    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34886 SLM1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31147 SPB4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33958 BioGRID:32161 SPO71    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32851 SPP381    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36473 SRB2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32344 SRP101    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35855 SSK2    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:32402 SVF1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34574 SYC1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35200 TAP42    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:32787 TEC1    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33434 TIM13    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34685 TIM18    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:34143 TOF2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35706 TOM70    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35155 TRM9    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31298 UBR2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32809 VID24    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31859 VMA1    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:31808 YAR029W    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32180 YDR124W    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36672 YEL057C    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:33876 YJR120W    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:31325 YLR050C    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:32808 YMC2    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36033 YPL150W    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36264 YPR097W    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:36766 YPT31    BioGRID  PubMed Negative Genetic 
    BioGRID:33958 BioGRID:35264 YTA12    BioGRID  PubMed Positive Genetic 
    BioGRID:33958 BioGRID:36768 ZRG8    BioGRID  PubMed Negative Genetic 
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    General gene information

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    cytochrome complex assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    cytochrome complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    mRNA processing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    mRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    mRNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    Cbt1p
    NP_012714.1
    • Protein involved in 5' end processing of mitochondrial COB, 15S_rRNA, and RPM1 transcripts; may also have a role in 3' end processing of the COB pre-mRNA; displays genetic interaction with cell cycle-regulated kinase Dbf2p
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001143.9

      Range
      47157..47972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179773.1 → NP_012714.1  Cbt1p [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P36038
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006944.2 DAA08961.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    P36038.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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