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    SOR1 Sor1p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 853624, updated on 6-May-2012
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    Summary

    Gene symbol
    SOR1
    Gene description
    Sor1p
    Primary source
    SGD:S000003920
    Locus tag
    YJR159W
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    SDH1
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    Genomic context

    Location :
    chromosome: X
    Sequence :
    Chromosome: X; NC_001142.9 (736044..737117)
    See SOR1 in MapViewer

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene Thi11p Neighboring gene Hxt16p Neighboring gene Mph3p Neighboring gene Cos5p

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Effect of alternative NAD+-regenerating pathways on the formation of primary and secondary aroma compounds in a Saccharomyces cerevisiae glycerol-defective mutant. Jain VK, et al. Appl Microbiol Biotechnol, 2012 Jan. PMID 21720823.
    2. An integrated approach to characterize genetic interaction networks in yeast metabolism. Szappanos B, et al. Nat Genet, 2011 May 29. PMID 21623372.
    3. Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae. Wenger JW, et al. PLoS Genet, 2010 May 13. PMID 20485559.
    4. Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast. Hasegawa Y, et al. RNA, 2008 Nov. PMID 18805955.
    5. Heterozygous screen in Saccharomyces cerevisiae identifies dosage-sensitive genes that affect chromosome stability. Strome ED, et al. Genetics, 2008 Mar. PMID 18245329.

    See all (10) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:33913 BioGRID:35686 AAH1    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:31302 ADE16    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:36110 BTS1    BioGRID  PubMed Positive Genetic 
    BioGRID:33913 BioGRID:36803 CEM1    BioGRID  PubMed Positive Genetic 
    BioGRID:33913 BioGRID:34306 COQ3    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:36483 COX6    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:35434 COX7    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:34559 DDP1    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:31354 GAL2    BioGRID  PubMed Positive Genetic 
    BioGRID:33913 BioGRID:32033 GPD1    BioGRID  PubMed Dosage Rescue 
    BioGRID:33913 BioGRID:34342 GPD2    BioGRID  PubMed Dosage Rescue 
    BioGRID:33913 BioGRID:32665 HEK2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:33913 BioGRID:35923 HSP82    BioGRID  PubMed Two-hybrid 
    BioGRID:33913 BioGRID:33607 INO1    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:35084 NDI1    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:35082 PHO84    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:36147 PHO85    BioGRID  PubMed Two-hybrid 
    BioGRID:33913 BioGRID:35488 PSE1    BioGRID  PubMed Two-hybrid 
    BioGRID:33913 BioGRID:32270 RAD9    BioGRID  PubMed Phenotypic Enhancement 
    BioGRID:33913 BioGRID:31866 SOR2    BioGRID  PubMed Phenotypic Enhancement; Two-hybrid 
    BioGRID:33913 BioGRID:35102 TEM1    BioGRID  PubMed Two-hybrid 
    BioGRID:33913 BioGRID:31033 THR4    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:32129 TPS2    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:33954 TRP3    BioGRID  PubMed Negative Genetic 
    BioGRID:33913 BioGRID:31344 XYL2    BioGRID  PubMed Phenotypic Enhancement 
    BioGRID:33913 BioGRID:33713 YJL045W    BioGRID  PubMed Negative Genetic 
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    General gene information

    Homology

    • Homologs of the SOR1 gene: The SOR1 gene is conserved in human, chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, , S.pombe, , N.crassa, A.thaliana, and rice.

    Pathways from BioSystems

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    L-iditol 2-dehydrogenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    L-iditol 2-dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    L-iditol 2-dehydrogenase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    hexose metabolic process IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
    		  
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    General protein information

    Names
    Sor1p
    NP_012693.1
    • Sorbitol dehydrogenase; expression is induced in the presence of sorbitol or xylose
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9

      Range
      736044..737117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181817.1 → NP_012693.1  Sor1p [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P35497
      Conserved Domains (2) summary
      cd05285
      Location:8 – 353
      Blast Score: 1322
      sorbitol_DH; Sorbitol dehydrogenase
      PLN02702
      Location:2 – 350
      Blast Score: 784
      PLN02702; L-idonate 5-dehydrogenase
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006943.2 DAA08943.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P35497.1 GenPept
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    Additional Links

    Gene LinkOut

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