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    IML1 Iml1p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 853603, updated on 8-Jan-2012
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    Summary

    Gene symbol
    IML1
    Gene description
    Iml1p
    Primary source
    SGD:S000003899
    Locus tag
    YJR138W
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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    Genomic context

    Sequence :
    Chromosome: X; NC_001142.9 (684567..689321)
    See IML1 in MapViewer

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene Tti2p Neighboring gene Met5p Neighboring gene Hom6p Neighboring gene Hir3p

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Selective regulation of autophagy by the Iml1-Npr2-Npr3 complex in the absence of nitrogen starvation. Wu X, et al. Mol Biol Cell, 2011 Nov. PMID 21900499.
    2. A conserved coatomer-related complex containing Sec13 and Seh1 dynamically associates with the vacuole in Saccharomyces cerevisiae. Dokudovskaya S, et al. Mol Cell Proteomics, 2011 Jun. PMID 21454883.
    3. A global protein kinase and phosphatase interaction network in yeast. Breitkreutz A, et al. Science, 2010 May 21. PMID 20489023.
    4. Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. Tonikian R, et al. PLoS Biol, 2009 Oct. PMID 19841731.
    5. Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. Batisse J, et al. J Biol Chem, 2009 Dec 11. PMID 19840948.

    See all (15) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:33894 BioGRID:32619 BOI1    BioGRID  PubMed Two-hybrid 
    BioGRID:33894 BioGRID:36859 BOI2    BioGRID  PubMed Two-hybrid 
    BioGRID:33894 BioGRID:33066 CDC55    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:35070 COG8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:34272 CTR9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:31945 CYK3    BioGRID  PubMed Two-hybrid 
    BioGRID:33894 BioGRID:33297 FMP48    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:32710 HHF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:35923 HSP82    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:31369 KIN2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:31697 LSM3    BioGRID  PubMed Two-hybrid 
    BioGRID:33894 BioGRID:36857 LSM4    BioGRID  PubMed Two-hybrid 
    BioGRID:33894 BioGRID:36895 LSM5    BioGRID  PubMed Two-hybrid 
    BioGRID:33894 BioGRID:35532 MCK1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:32659 MRPL16    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:32184 MTC5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:33129 NAB2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:33894 BioGRID:36667 NPR2    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:33894 BioGRID:36399 NPR3    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:33894 BioGRID:35810 PUB1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:32853 RPB5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:34238 RTC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:31476 SEC13    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:33149 SEH1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:33414 TIF4631    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:32827 TPS1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:35484 UBP15    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:33894 BioGRID:36717 VAC8    BioGRID  PubMed PCA 
    BioGRID:33894 BioGRID:32599 YBL104C    BioGRID  PubMed Affinity Capture-MS 
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    General gene information

    Homology

    • Homologs of the IML1 gene: The IML1 gene is conserved in S.pombe, S.cerevisiae, K.lactis, E.gossypii, M.grisea, and N.crassa.

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
    		  
    intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    Seh1-associated complex IDA
    Inferred from Direct Assay
    more info
    		  
    extrinsic to fungal-type vacuolar membrane IDA
    Inferred from Direct Assay
    more info
    		  
    fungal-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    vacuole IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    Iml1p
    NP_012672.1
    • hypothetical protein, green fluorescent protein (GFP)-fusion protein localizes to the vacuolar membrane
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9

      Range
      684567..689321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181796.2 → NP_012672.1  Iml1p [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P47170
      Conserved Domains (2) summary
      cd04449
      Location:1188 – 1271
      Blast Score: 305
      DEP_DEPDC5-like; DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
      pfam12257
      Location:207 – 485
      Blast Score: 1272
      DUF3608; Protein of unknown function (DUF3608)
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006943.2 DAA08923.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    P47170.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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