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YBL005W-B gag-pol fusion protein [ Saccharomyces cerevisiae S288c ]

Gene ID: 852280, updated on 6-Jul-2014
Gene symbol
YBL005W-B
Gene description
gag-pol fusion protein
Primary source
SGD:S000002147
Locus tag
YBL005W-B
Gene type
protein coding
RNA name
gag-pol fusion protein
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
See YBL005W-B in MapViewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_001134.8 (221330..226598)

Chromosome II - NC_001134.8Genomic Context describing neighboring genes Neighboring gene Ldb7p Neighboring gene Pdr3p Neighboring gene gag protein Neighboring gene tRNA Neighboring gene Utp20p

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by GO

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
DNA-directed DNA polymerase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 
RNA-directed DNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 
RNA-directed DNA polymerase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
peptidase activity IEA
Inferred from Electronic Annotation
more info
 
peptidase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
ribonuclease activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA integration IEA
Inferred from Electronic Annotation
more info
 
DNA recombination IEA
Inferred from Electronic Annotation
more info
 
DNA-dependent DNA replication IEA
Inferred from Electronic Annotation
more info
 
RNA phosphodiester bond hydrolysis, endonucleolytic IEA
Inferred from Electronic Annotation
more info
 
RNA-dependent DNA replication IEA
Inferred from Electronic Annotation
more info
 
metabolic process IEA
Inferred from Electronic Annotation
more info
 
nucleic acid phosphodiester bond hydrolysis IEA
Inferred from Electronic Annotation
more info
 
proteolysis IEA
Inferred from Electronic Annotation
more info
 
transposition IEA
Inferred from Electronic Annotation
more info
 
transposition, RNA-mediated ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
viral release from host cell IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
retrotransposon nucleocapsid ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Names
gag-pol fusion protein
NP_009549.1
  • Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is processed to make a nucleocapsid-like protein (Gag), reverse transcriptase (RT), protease (PR), and integrase (IN); similar to retroviral genes

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001134.8 

    Range
    221330..226598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001180048.1NP_009549.1  gag-pol fusion protein [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_009549.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q12490
    Conserved Domains (5) summary
    pfam01021
    Location:17114
    Blast Score: 511
    TYA; TYA transposon protein
    pfam00665
    Location:663782
    Blast Score: 219
    rve; Integrase core domain
    pfam04503
    Location:53183
    Blast Score: 127
    SSDP; Single-stranded DNA binding protein, SSDP
    pfam07727
    Location:12651494
    Blast Score: 351
    RVT_2; Reverse transcriptase (RNA-dependent DNA polymerase)
    cd09272
    Location:16061742
    Blast Score: 230
    RNase_HI_RT_Ty1; Ty1/Copia family of RNase HI in long-term repeat retroelements