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YBL055C 3'-5'-exodeoxyribonuclease [ Saccharomyces cerevisiae S288c ]

Gene ID: 852225, updated on 5-Jun-2016
Gene symbol
YBL055C
Gene description
3'-5'-exodeoxyribonuclease
Primary source
SGD:S000000151
Locus tag
YBL055C
Gene type
protein coding
RNA name
3'-5'-exodeoxyribonuclease
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
See YBL055C in Map Viewer
Location:
chromosome: II
Exon count:
1
Sequence:
Chromosome: II; NC_001134.8 (115573..116829, complement)

Chromosome II - NC_001134.8Genomic Context describing neighboring genes Neighboring gene aminoacyl-tRNA hydrolase Neighboring gene type 2C protein phosphatase PTC3 Neighboring gene Tod6p Neighboring gene Sas3p

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
3'-5'-exodeoxyribonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEA
Inferred from Electronic Annotation
more info
 
endonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclease activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
apoptotic DNA fragmentation IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
intracellular organelle IBA
Inferred from Biological aspect of Ancestor
more info
 
Names
3'-5'-exodeoxyribonuclease
NP_009498.1
  • 3'-->5' exonuclease and endonuclease with a possible role in apoptosis; has similarity to mammalian and C. elegans apoptotic nucleases

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001134.8 Reference assembly

    Range
    115573..116829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001178295.1NP_009498.1  3'-5'-exodeoxyribonuclease [Saccharomyces cerevisiae S288c]

    See identical proteins and their annotated locations for NP_009498.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34220
    Conserved Domains (1) summary
    cd01310
    Location:38417
    TatD_DNAse; TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.