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    IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein [ Homo sapiens ]

    Gene ID: 8518, updated on 11-May-2012

    Summary

    Official Symbol
    IKBKAPprovided by HGNC
    Official Full Name
    inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated proteinprovided by HGNC
    Primary source
    HGNC:5959
    Locus tag
    RP11-3J11.4
    See related
    Ensembl:ENSG00000070061; HPRD:04763; MIM:603722; Vega:OTTHUMG00000020465
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FD; DYS; ELP1; IKAP; IKI3; TOT1; FLJ12497; DKFZp781H1425
    Summary
    The protein encoded by this gene is a scaffold protein and a regulator for 3 different kinases involved in proinflammatory signaling. This encoded protein can bind NF-kappa-B-inducing kinase (NIK) and IKKs through separate domains and assemble them into an active kinase complex. Mutations in this gene have been associated with familial dysautonomia. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    9q31
    Sequence :
    Chromosome: 9; NC_000009.11 (111629800..111696608, complement)
    See IKBKAP in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene actin-like 7B Neighboring gene actin-like 7A Neighboring gene family with sequence similarity 206, member A Neighboring gene catenin (cadherin-associated protein), alpha-like 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    hereditary sensory autonomic neuropathy type III

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Familial dysautonomia (FD) affects the development and survival of sensory, sympathetic, and parasympathetic neurons. It is a debilitating disease present from birth. Neuronal degeneration progresses throughout life. Affected individuals have gastrointestinal dysfunction, vomiting crises, recurrent pneumonia, altered sensitivity to pain and temperature perception, and cardiovascular instability. About 40% of individuals have autonomic crises. Hypotonia contributes to delay in acquisition of motor milestones. Older individuals often have a broad-based and ataxic gait that deteriorates over time. Life expectancy is decreased.
    Diagnosis Testing
    The diagnosis of FD is established by molecular genetic testing of IKBKAP. Such testing is available clinically. Two mutations account for more than 99% of mutant alleles in individuals with FD of Ashkenazi Jewish descent. The major founder mutation c.2204+6T>C (formerly IVS20+6T>C) is responsible for virtually all occurrences of FD among the Ashkenazim.
    Genetic Counseling
    Familial dysautonomia is inherited in an autosomal recessive manner. At conception, each sib of an affected individual has a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the chance of his/her being a carrier is 2/3. Carrier testing and prenatal diagnosis for pregnancies at increased risk is possible if the disease-causing mutations in the family are known.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_003631.2 NP_001269.2 CHUK    BIND  PubMed IKAP interacts with IKK-alpha. This interaction was modeled on a demonstrated interaction between human IKAP and IKK-alpha from an unspecified species. 
    NP_003631.2 NP_001547.1 IKBKB    BIND  PubMed IKAP interacts with IKK-beta. 
    NP_003631.2 NP_003945.1 MAP3K14    BIND  PubMed IKAP interacts with NIK. 
    O95163 P46379 BAG6    HPRD  PubMed  
    O95163 Q99728 BARD1    HPRD  PubMed  
    O95163 P48643 CCT5    HPRD  PubMed  
    O95163 P42772 CDKN2B    HPRD  PubMed  
    O95163 O15111 CHUK    HPRD  PubMed  
    O95163 P33240 CSTF2    HPRD  PubMed  
    O95163 P42858 HTT    HPRD  PubMed  
    O95163 O95163 IKBKAP    HPRD  PubMed  
    O95163 O14920 IKBKB    HPRD  PubMed  
    O95163 P49641 MAN2A2    HPRD  PubMed  
    O95163 Q99558 MAP3K14    HPRD  PubMed  
    O95163 O43318 MAP3K7    HPRD  PubMed  
    O95163 P45983 MAPK8    HPRD  PubMed  
    O95163 Q9Y6G3 MRPL42    HPRD  PubMed  
    O95163 Q9Y6M9 NDUFB9    HPRD  PubMed  
    O95163 P25963 NFKBIA    HPRD  PubMed  
    O95163 Q9UFN0 NIPSNAP3A    HPRD  PubMed  
    O95163 P40425 PBX2    HPRD  PubMed  
    O95163 Q04941 PLP2    HPRD  PubMed  
    O95163 Q9NX18 SDHAF2    HPRD  PubMed  
    O95163 O95295 SNAPIN    HPRD  PubMed  
    O95163 Q9UHF0 TAC3    HPRD  PubMed  
    O95163 P02766 TTR    HPRD  PubMed  
    O95163 O14530 TXNDC9    HPRD  PubMed  
    BioGRID:114090 BioGRID:113647 BAG6    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:116603 CCT5    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:107464 CDKN2B    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:107569 CHUK    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114090 BioGRID:107860 CSTF2    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:120541 ELP2    BioGRID  PubMed Affinity Capture-Western; Co-purification 
    BioGRID:114090 BioGRID:120444 ELP3    BioGRID  PubMed Affinity Capture-Western; Co-purification 
    BioGRID:114090 BioGRID:117764 ELP4    BioGRID  PubMed Affinity Capture-Western; Co-purification 
    BioGRID:114090 BioGRID:109314 HTT    BioGRID  PubMed Reconstituted Complex; Two-hybrid 
    BioGRID:114090 BioGRID:109767 IKBKB    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114090 BioGRID:109870 IRF4    BioGRID  PubMed Affinity Capture-MS; Reconstituted Complex 
    BioGRID:114090 BioGRID:110295 MAN2A2    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:114487 MAP3K14    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114090 BioGRID:112748 MAP3K7    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:114090 BioGRID:111585 MAPK8    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex; Two-hybrid 
    BioGRID:114090 BioGRID:118800 MRPL42    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:110694 MYC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:114090 BioGRID:110795 NDUFB9    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:110859 NFKBIA    BioGRID  PubMed Reconstituted Complex 
    BioGRID:114090 BioGRID:117432 NIPSNAP3A    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:111369 PLP2    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:120288 SDHAF2    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:117101 SNAPIN    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:112729 TAC3    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:113127 TTR    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:115487 TXNDC9    BioGRID  PubMed Two-hybrid 
    BioGRID:114090 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    • Homologs of the IKBKAP gene: The IKBKAP gene is conserved in chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, , S.pombe, , and N.crassa.
    • Map Viewer (Mouse, Rat)

    Pathways from BioSystems

    • TNF-alpha/NF-kB Signaling Pathway, organism-specific biosystem (from WikiPathways)
      TNF-alpha/NF-kB Signaling Pathway, organism-specific biosystem"The Tumor Necrosis Factor alpha is a proinflammatory cytokine belonging to the TNF superfamily. It signals through 2 separate receptors - TNFRSF1A and TNFRSF1B, both members of the TNF receptor supe...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    contributes_to DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    phosphorylase kinase regulator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    signal transducer activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    I-kappaB phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    immune response TAS
    Traceable Author Statement
    more info
    PubMed 
    protein complex assembly TAS
    Traceable Author Statement
    more info
    PubMed 
    protein phosphorylation TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of transcription from RNA polymerase II promoter TAS
    Traceable Author Statement
    more info
    PubMed 
    signal transduction TAS
    Traceable Author Statement
    more info
    PubMed 
    transcription elongation from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    DNA-directed RNA polymerase II, holoenzyme IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleolus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription elongation factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    elongator complex protein 1
    Names
    elongator complex protein 1
    p150
    IKK complex-associated protein
    ikappaB kinase complex-associated protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008788.1 RefSeqGene

      Range
      5001..71809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_003640.3NP_003631.2  elongator complex protein 1

      Status: REVIEWED

      Source sequence(s)
      AF153419, AK289962, BC033094, BF968300, DA400136
      Consensus CDS
      CCDS6773.1
      UniProtKB/Swiss-Prot
      O95163
      UniProtKB/TrEMBL
      Q8N516
      Related
      ENSP00000363779, OTTHUMP00000021869, ENST00000374647, OTTHUMT00000053574
      Conserved Domains (1) summary
      pfam04762
      Location:1954
      Blast Score: 2868
      IKI3; IKI3 family

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p5 Primary Assembly

      Range
      111629800..111696608, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      81229552..81296258, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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