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SNF11 Snf11p [ Saccharomyces cerevisiae S288C ]

Gene ID: 851645, updated on 13-Apr-2024

Summary

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Gene symbol
SNF11
Gene description
Snf11p
Primary source
SGD:S000002480
Locus tag
YDR073W
See related
AllianceGenome:SGD:S000002480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Involved in positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleus. Part of SWI/SNF complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: IV
Exon count:
1
Sequence:
Chromosome: IV; NC_001136.10 (592439..592948)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene polyamine acetyltransferase Neighboring gene inositolphosphotransferase Neighboring gene trehalose-phosphatase TPS2 Neighboring gene phosphoprotein phosphatase PP4 catalytic subunit PPH3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001136.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations. Payen C, et al. PLoS Genet, 2016 Oct. PMID 27727276, Free PMC Article
  2. A chromatin-based mechanism for limiting divergent noncoding transcription. Marquardt S, et al. Cell, 2014 Jun 19. PMID 24949978, Free PMC Article
  3. Molecular evolution of minisatellites in hemiascomycetous yeasts. Richard GF, et al. Mol Biol Evol, 2006 Jan. PMID 16177231
  4. The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. Tran HG, et al. EMBO J, 2000 May 15. PMID 10811623, Free PMC Article
  5. Subunits of the yeast SWI/SNF complex are members of the actin-related protein (ARP) family. Peterson CL, et al. J Biol Chem, 1998 Sep 11. PMID 9726966

See all (60) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Snf11p
NP_010358.3
  • Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; interacts with a highly conserved 40-residue sequence of Snf2p; relocates to the cytosol under hypoxic conditions

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001136.10 Reference assembly

    Range
    592439..592948
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001180381.3 → NP_010358.3  TPA: Snf11p [Saccharomyces cerevisiae S288C]

    See identical proteins and their annotated locations for NP_010358.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D6VS59, P38956
    UniProtKB/TrEMBL
    A0A8H8UMY9, C8Z4Z1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P38956.1

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