RPS29B Rps29bp [Saccharomyces cerevisiae S288c] - Gene

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Summary

Gene symbol: RPS29B
Gene description: Rps29bp
Primary source: SGD:S000002219
Locus tag: YDL061C
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Saccharomyces cerevisiae S288c (strain: S288c)
Lineage: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces

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Genomic context

Sequence :: Chromosome: IV; NC_001136.10 (340628..340798, complement)

See RPS29B in MapViewer

Chromosome IV - NC_001136.10 Genomic Context describing neighboring genes

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Genomic regions, transcripts, and products

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

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Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

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Interactions

Products	Interactant	Other Gene	Source	Pubs	Description
BioGRID:31997	BioGRID:35617	ALG9	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:34535	ARP8	BioGRID	PubMed	Positive Genetic
BioGRID:31997	BioGRID:33532	BGL2	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:31745	CCR4	BioGRID	PubMed	Synthetic Growth Defect
BioGRID:31997	BioGRID:35014	DAL81	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:35824	DOM34	BioGRID	PubMed	Negative Genetic; Synthetic Growth Defect
BioGRID:31997	BioGRID:35002	DSN1	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:32336	GCN2	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:33503	GCN5	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:35584	GIS2	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:33594	HAL5	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:34215	HBS1	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:32902	KTR3	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:31742	LTE1	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:31245	MMM1	BioGRID	PubMed	Positive Genetic
BioGRID:31997	BioGRID:33129	NAB2	BioGRID	PubMed	Affinity Capture-RNA
BioGRID:31997	BioGRID:31191	PHO4	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:35097	POB3	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:35877	POP2	BioGRID	PubMed	Synthetic Growth Defect
BioGRID:31997	BioGRID:35629	RIO2	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:31152	RPN11	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:31647	RPS29A	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:33525	RTT102	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:35630	RTT106	BioGRID	PubMed	Synthetic Lethality
BioGRID:31997	BioGRID:31638	SEC61	BioGRID	PubMed	Positive Genetic
BioGRID:31997	BioGRID:34644	SEC63	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:32420	SEM1	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:33481	SMI1	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:32344	SRP101	BioGRID	PubMed	Positive Genetic
BioGRID:31997	BioGRID:36123	SUR1	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:31215	UBI4	BioGRID	PubMed	Affinity Capture-MS
BioGRID:31997	BioGRID:33436	UBR1	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:33348	VMA21	BioGRID	PubMed	Synthetic Growth Defect
BioGRID:31997	BioGRID:33349	VOA1	BioGRID	PubMed	Synthetic Growth Defect
BioGRID:31997	BioGRID:31562	YHC1	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:31421	YLR152C	BioGRID	PubMed	Negative Genetic
BioGRID:31997	BioGRID:33531	YOR1	BioGRID	PubMed	Negative Genetic

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General gene information

Homology

Homologs of the RPS29B gene: The RPS29B gene is conserved in S.cerevisiae, K.lactis, E.gossypii, and N.crassa.

Pathways from BioSystems

Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
Cap-dependent Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Elongation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Formation of a pool of free 40S subunits, organism-specific biosystem (from REACTOME)
Formation of a pool of free 40S subunits, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Formation of the ternary complex, and subsequently, the 43S complex, organism-specific biosystem (from REACTOME)
Formation of the ternary complex, and subsequently, the 43S complex, organism-specific biosystemcomputationally inferred pathway (not manually curated)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystem (from REACTOME)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystem (from REACTOME)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Metabolism of proteins, organism-specific biosystem (from REACTOME)
Metabolism of proteins, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Peptide chain elongation, organism-specific biosystem (from REACTOME)
Peptide chain elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosomal scanning and start codon recognition, organism-specific biosystem (from REACTOME)
Ribosomal scanning and start codon recognition, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosome, organism-specific biosystem (from KEGG)
Ribosome, organism-specific biosystem
Ribosome
Ribosome, conserved biosystem (from KEGG)
Ribosome, conserved biosystem
Ribosome
Ribosome, eukaryotes, organism-specific biosystem (from KEGG)
Ribosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; Ribosome
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystem (from REACTOME)
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Translation, organism-specific biosystem (from REACTOME)
Translation, organism-specific biosystemcomputationally inferred pathway (not manually curated)

Gene Ontology Provided by GO

Function	Evidence Code	Pubs
metal ion binding	IEA Inferred from Electronic Annotation more info
structural constituent of ribosome	IDA Inferred from Direct Assay more info	PubMed
structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
cytoplasmic translation	IC Inferred by Curator more info	PubMed
translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
cytoplasm	IEA Inferred from Electronic Annotation more info
cytosolic small ribosomal subunit	IDA Inferred from Direct Assay more info	PubMed
intracellular	IEA Inferred from Electronic Annotation more info
ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
ribosome	IEA Inferred from Electronic Annotation more info

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General protein information

Names: Rps29bp

NP_010222.1

Protein component of the small (40S) ribosomal subunit; nearly identical to Rps29Ap and has similarity to rat S29 and E. coli S14 ribosomal proteins

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NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_001136.10

Range

340628..340798, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001180120.1 → NP_010222.1 Rps29bp [Saccharomyces cerevisiae S288c]

Status: PROVISIONAL

UniProtKB/Swiss-Prot

P41058

Conserved Domains (1) summary

cl00355
Location:5 – 56
Blast Score: 209

Ribosomal_S14; Ribosomal protein S14p/S29e