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    RXT3 Rxt3p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 851483, updated on 21-Jan-2012
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    Summary

    Gene symbol
    RXT3
    Gene description
    Rxt3p
    Primary source
    SGD:S000002234
    Locus tag
    YDL076C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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    Genomic context

    Sequence :
    Chromosome: IV; NC_001136.10 (320668..321552, complement)
    See RXT3 in MapViewer

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene Mdh3p Neighboring gene Vam6p Neighboring gene Rpl31ap Neighboring gene ncRNA

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    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
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    Bibliography

    Related articles in PubMed

    1. Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes. Lee KK, et al. Mol Syst Biol, 2011 Jul 5. PMID 21734642.
    2. The Rpd3L HDAC complex is essential for the heat stress response in yeast. Ruiz-Roig C, et al. Mol Microbiol, 2010 May. PMID 20398213.
    3. The genetic landscape of a cell. Costanzo M, et al. Science, 2010 Jan 22. PMID 20093466.
    4. Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. Batisse J, et al. J Biol Chem, 2009 Dec 11. PMID 19840948.
    5. Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics. Sardiu ME, et al. PLoS One, 2009 Oct 6. PMID 19806189.

    See all (23) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. Rpd3 bound to heat stress-dependent promoters through the Msn2/4 transcription factors, allowing entry of RNA Pol II and activation of transcription upon stress.
      Title: The Rpd3L HDAC complex is essential for the heat stress response in yeast.
    Submit: New GeneRIF Correction
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    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:31985 BioGRID:35617 ALG9    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36693 ANP1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:31442 APS1    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:33937 ASH1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:36905 BEM2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35876 BRE5    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:31579 CDC3    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35346 CEP3    BioGRID  PubMed Two-hybrid 
    BioGRID:31985 BioGRID:31371 CHA4    BioGRID  PubMed Two-hybrid 
    BioGRID:31985 BioGRID:31594 CHS5    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35540 CLA4    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:31360 CSF1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36001 CTI6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:31753 DEP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:34432 DFG16    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36833 DOT6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:33503 GCN5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:33226 GET1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36828 GET2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36728 GIM4    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:35049 GIM5    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:32665 HEK2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:31985 BioGRID:33206 HEM2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34902 ICE2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:32179 INO2    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:34293 INO4    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:34321 IRA2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34568 MED4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:33900 MGM101    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34715 MIP1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:32296 MNN10    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33579 MNN11    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36099 MOT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:35077 MSC1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35194 MSS1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34711 MYO2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33129 NAB2    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:31985 BioGRID:33045 NCS6    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:32052 NHP10    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:31150 NIC96    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34213 NUP133    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35040 NUP188    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33364 NUP57    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:31946 NUP84    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33829 OPI3    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:31612 ORM2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34285 PAP2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33582 PFD1    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:33380 PHB1    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:35726 PHO23    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:32794 POL30    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:36350 PRP4    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36924 RAD3    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33189 RAD6    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35620 RAP1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35725 RAS2    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:31315 RIC1    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:35543 RIM21    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36679 RML2    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35413 RNA1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33617 RPB4    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35511 RPD3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:33959 RPL17A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:31210 RPN12    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:32996 RTF1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:32801 RXT2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:32210 SAC3    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35441 SAP30    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:32738 SCO1    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:35451 SCS7    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34908 SDS3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:31536 SEC22    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33115 SEC27    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:32954 SHG1    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:34400 SIN3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:33124 SOH1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36856 SWI4    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34329 THP1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36218 TIF5    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34685 TIM18    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33823 TOR1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36901 UBP3    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36043 UME1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:32257 UME6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31985 BioGRID:32873 UMP1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:34487 VPS21    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:35046 VPS9    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:36729 WBP1    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33546 YJL213W    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:33876 YJR120W    BioGRID  PubMed Negative Genetic 
    BioGRID:31985 BioGRID:31469 YKE2    BioGRID  PubMed Positive Genetic 
    BioGRID:31985 BioGRID:31529 YPT6    BioGRID  PubMed Positive Genetic 
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    General gene information

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    chromatin modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    negative regulation of transcription from RNA polymerase I promoter IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
    		  
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    Rpd3L complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Rpd3L-Expanded complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
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    General protein information

    Names
    Rxt3p
    NP_010207.1
    • Subunit of the RPD3L complex; involved in histone deacetylation
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    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10

      Range
      320668..321552, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180135.1 → NP_010207.1  Rxt3p [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q07458
      Conserved Domains (1) summary
      cl02694
      Location:140 – 253
      Blast Score: 425
      LCCL; LCCL domain
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    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006938.2 DAA11783.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    Q07458.1 GenPept
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    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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