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RPS0B ribosomal 40S subunit protein S0B [ Saccharomyces cerevisiae S288c ]

Gene ID: 850737, updated on 5-Jun-2016
Gene symbol
RPS0B
Gene description
ribosomal 40S subunit protein S0B
Primary source
SGD:S000004038
Locus tag
YLR048W
Gene type
protein coding
RNA name
ribosomal 40S subunit protein S0B
RefSeq status
REVIEWED
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
NAB1B; YST2
See RPS0B in Map Viewer
Location:
chromosome: XII
Exon count:
2
Sequence:
Chromosome: XII; NC_001144.5 (242232..243349)

Chromosome XII - NC_001144.5Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene putative ferric-chelate reductase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
structural constituent of ribosome IDA
Inferred from Direct Assay
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cytoplasmic translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
Inferred from Mutant Phenotype
more info
PubMed 
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
Inferred from Mutant Phenotype
more info
PubMed 
rRNA export from nucleus IGI
Inferred from Genetic Interaction
more info
PubMed 
rRNA processing IEA
Inferred from Electronic Annotation
more info
 
ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 
ribosomal small subunit assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
90S preribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
Names
ribosomal 40S subunit protein S0B
NP_013149.1
  • Protein component of the small (40S) ribosomal subunit; RPS0B has a paralog, RPS0A, that arose from the whole genome duplication; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal; homologous to human ribosomal protein SA and bacterial S2

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001144.5 Reference assembly

    Range
    242232..243349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181935.1NP_013149.1  ribosomal 40S subunit protein S0B [Saccharomyces cerevisiae S288c]

    See identical proteins and their annotated locations for NP_013149.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P46654
    Conserved Domains (2) summary
    cd01425
    Location:17183
    RPS2; Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ...
    PTZ00254
    Location:1252
    PTZ00254; 40S ribosomal protein SA; Provisional