My NCBISign In

Display Settings:

Format

Send to:

Choose Destination

    TAF2 Taf2p [ Saccharomyces cerevisiae S288c ]

    Gene ID: 850409, updated on 5-Feb-2012
    Help top of page

    Summary

    Gene symbol
    TAF2
    Gene description
    Taf2p
    Primary source
    SGD:S000000638
    Locus tag
    YCR042C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Saccharomyces cerevisiae S288c (strain: S288c)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    TAF150; TSM1
    Help top of page

    Genomic context

    Sequence :
    Chromosome: III; NC_001135.5 (201174..205397, complement)
    See TAF2 in MapViewer

    Chromosome III - NC_001135.5Genomic Context describing neighboring genes Neighboring gene Bud5p Neighboring gene Matalpha2p Neighboring gene Matalpha1p Neighboring gene hypothetical protein Neighboring gene Per1p

    Help top of page

    Genomic regions, transcripts, and products

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details
    Helptop of page

    Bibliography

    Related articles in PubMed

    1. Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes. Lee KK, et al. Mol Syst Biol, 2011 Jul 5. PMID 21734642.
    2. The YEATS domain of Taf14 in Saccharomyces cerevisiae has a negative impact on cell growth. Schulze JM, et al. Mol Genet Genomics, 2010 Apr. PMID 20179968.
    3. Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters. Ohtsuki K, et al. Nucleic Acids Res, 2010 Apr. PMID 20026583.
    4. In-depth profiling of post-translational modifications on the related transcription factor complexes TFIID and SAGA. Mischerikow N, et al. J Proteome Res, 2009 Nov. PMID 19731963.
    5. Mapping the initiator binding Taf2 subunit in the structure of hydrated yeast TFIID. Papai G, et al. Structure, 2009 Mar 11. PMID 19278651.

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    1. a specific effect of a Taf1 mutation on Taf2 occupancy that may reflect the spatial relationship between Taf1 and Taf2 within TFIID
      Title: Genome-wide localization analysis of a complete set of Tafs reveals a specific effect of the taf1 mutation on Taf2 occupancy and provides indirect evidence for different TFIID conformations at different promoters.
    Submit: New GeneRIF Correction
    Help top of page

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:31024 BioGRID:33639 ASF1    BioGRID  PubMed Dosage Rescue 
    BioGRID:31024 BioGRID:36540 CDC12    BioGRID  PubMed Synthetic Growth Defect 
    BioGRID:31024 BioGRID:32353 CFT1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:31387 CFT2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:35397 ESC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:33847 FIP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:34353 GAL11    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:31024 BioGRID:36105 GCR1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:31709 LEU3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:34074 MPE1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:35209 MSN2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:34134 PAP1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:31784 PTA1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:32247 REF2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:36237 ROX1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:36897 SPT15    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:31024 BioGRID:36137 SSN3    BioGRID  PubMed Biochemical Activity 
    BioGRID:31024 BioGRID:35614 SSU72    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:33524 TAF1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-purification 
    BioGRID:31024 BioGRID:32218 TAF10    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:31024 BioGRID:35154 TAF11    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:31024 BioGRID:32199 TAF12    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:35045 TAF13    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:36052 TAF14    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Two-hybrid 
    BioGRID:31024 BioGRID:31024 TAF2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:36166 TAF3    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:35175 TAF4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:32895 TAF5    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:31024 BioGRID:33139 TAF6    BioGRID  PubMed Affinity Capture-MS; Two-hybrid 
    BioGRID:31024 BioGRID:35405 TAF7    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:35090 TAF8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:35414 TAF9    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:34051 TEF4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:36230 TFB4    BioGRID  PubMed Co-purification 
    BioGRID:31024 BioGRID:31215 UBI4    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:31024 BioGRID:31545 YSH1    BioGRID  PubMed Affinity Capture-MS 
    Help top of page

    General gene information

    Pathways from BioSystems

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    chromatin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    contributes_to sequence-specific core promoter binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly IC
    Inferred by Curator
    more info
    		 PubMed 
    Process Evidence Code Pubs
    RNA polymerase II transcriptional preinitiation complex assembly IC
    Inferred by Curator
    more info
    		 PubMed 
    regulation of transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
    		  
    transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    transcription factor TFIID complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Help top of page

    General protein information

    Names
    Taf2p
    NP_009971.1
    • TFIID subunit (150 kDa), involved in RNA polymerase II transcription initiation
    Help top of page

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001135.5

      Range
      201174..205397, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001178756.1 → NP_009971.1  Taf2p [Saccharomyces cerevisiae S288c]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P23255
      Conserved Domains (1) summary
      cl14813
      Location:343 – 692
      Blast Score: 582
      GluZincin; Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins)
    Help top of page

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic BK006937.2 DAA07520.1
    Protein Accession Links
    GenePept Link UniProtKB Link
    P23255.3 GenPept
    Help top of page

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

      Supplemental Content

      Recent activity

      Clear Turn Off Turn On

      Your browsing activity is empty.

      Activity recording is turned off.

      Turn recording back on

      See more...